Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_O07
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 123 9e-30
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 119 1e-28
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 28 0.46
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 1.4
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 26 1.9
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 4.3
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 24 7.6
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 7.6
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 24 10.0
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 24 10.0
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 123 bits (297), Expect = 9e-30
Identities = 59/102 (57%), Positives = 73/102 (71%)
Frame = +2
Query: 38 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 217
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK IPRCG L+GI RP
Sbjct: 1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 218 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKXVK 343
E +RL + KKTV+R YGG L VK RIVRAFLIEEQK VK
Sbjct: 61 EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 119 bits (287), Expect = 1e-28
Identities = 57/102 (55%), Positives = 72/102 (70%)
Frame = +2
Query: 38 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 217
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK IPRCG L+GI RP
Sbjct: 1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 218 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKXVK 343
E +RL + +K V+R YGG L VK RIVRAFLIEEQK VK
Sbjct: 61 EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 28.3 bits (60), Expect = 0.46
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 310 SDNALLDTFMAEDTTINTFH 251
SDNA +DT ++ED TIN H
Sbjct: 83 SDNAAIDTDISEDETINQRH 102
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 59 RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 166
RR + N KS+++R PG L + KPK R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 1.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 59 RRRLSYNTKSN-QRRIVRTPGGRLVY 133
R+ SY T + +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 358 CGLEDLHXFLFFNEEGSDNALLDTFMAEDTTINTFHCFLTVAKTGTFS 215
CGLE G+DNAL+ E+ + +FH + K T+S
Sbjct: 378 CGLEWNSNENLLASGGNDNALMVWDKFEEKPLYSFHNHIAAVKAITWS 425
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 236 YRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKXVKVLK 352
+R+K R+ G ++C C+K+ F+ Q +KV +
Sbjct: 76 FRRKHHCRICGKIICKYCLKE--APGFIFRLQGSIKVCR 112
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 7.6
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 164 RCGQCKSKLRGIQPARPAERSR 229
RC +CK +G RP R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.8 bits (49), Expect = 10.0
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Frame = +2
Query: 134 QYVKKPKKIPRCGQCKSKLRG-------IQPARPAERSR---LCYRKKTVKRVYG 268
Q + K KK P C C SK I+ + P ++S+ LC R V R YG
Sbjct: 659 QKILKLKKTPICRWCHSKRSSEWFVAPPIEESSPKDKSKIVALCQRCGYVWRYYG 713
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 23.8 bits (49), Expect = 10.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -3
Query: 185 CSCTDHTLGSS----WAFLHTDKPSGHPVSLLFFFDL 87
CS TD + S + FLHT +PSG L F ++
Sbjct: 783 CSFTDFEINSILNFFFCFLHTVEPSGKLTFELAFLEI 819
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,533
Number of Sequences: 5004
Number of extensions: 31337
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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