Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_O05
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   0.53 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    29   0.70 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.92 
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           28   1.2  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.6  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   6.5  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 560 WYVQNIPTYCXAHXWRCPVLNRSLCEWA 477
           +Y+QNIP       +RC  ++ ++C+W+
Sbjct: 465 YYLQNIPIQKKYESYRCLFISGTICQWS 492


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 141 NFDHDKHIFTGHGGKQRTKKEASEH--TNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 308
           N + D +    H  K    ++ S H   +HFDPS + +K+V+      + K +S  KH
Sbjct: 18  NEEDDDYYSNAHSEKS---EDHSNHIKVSHFDPSSYKQKLVSVRETQRNRKFSSLQKH 72


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 165 FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 284
           ++GH         ++   NHF+ +GH    +T  +N+ +N
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 434 WNIQGVFCSHKISTSPTHRGCDLERDNATXEPSSKSV 544
           +N++GVF  + +       GC  ERD AT +   K +
Sbjct: 56  YNVEGVFMRNWLDEDSAPSGCPAERDWATVQKVCKKL 92


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 126 EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS 245
           +YD++N DH  H    H     +  EA+         GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -3

Query: 598 VTSPLFEIRHWNGGTSKIYRLTAXLXXGVVPF*IAASVSGRSRNFV*AKNALDVPSI 428
           +TS  F + +  G  S IY +T       + F I  S SGR   +  +   LD+ +I
Sbjct: 646 LTSAEFVVMNPKGSPSSIYVVTGTYRGMTLLFRIDPSSSGRFSAYFESSRQLDIKNI 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,395
Number of Sequences: 5004
Number of extensions: 50818
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)