Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_O04
         (630 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD...   275   3e-74
AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA...   275   3e-74
AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p pro...   232   3e-61
AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB...   232   3e-61
X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal prot...   152   4e-37
AY069336-1|AAL39481.1|  258|Drosophila melanogaster LD05259p pro...    29   3.9  
AE014297-401|AAF51920.1|  258|Drosophila melanogaster CG10287-PA...    29   3.9  
AF070734-1|AAD09748.1|  218|Drosophila melanogaster Gasp precurs...    29   5.2  
AY058781-1|AAL14010.1|  585|Drosophila melanogaster SD07191p pro...    29   6.9  
AE014296-3712|AAF51856.1|  585|Drosophila melanogaster CG11238-P...    29   6.9  

>AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD,
           isoform D protein.
          Length = 195

 Score =  275 bits (675), Expect = 3e-74
 Identities = 136/172 (79%), Positives = 143/172 (83%)
 Frame = +2

Query: 56  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 235
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 236 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 415
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 416 AKSXXXXXXXXXXXXXXXXXXXXXXPSFIVRLDSGKHIDFSLKSPFXGGRPG 571
           AKS                      PSF+VRLDS KHIDFSLKSPF GGRPG
Sbjct: 121 AKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPG 172


>AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA,
           isoform A protein.
          Length = 195

 Score =  275 bits (675), Expect = 3e-74
 Identities = 136/172 (79%), Positives = 143/172 (83%)
 Frame = +2

Query: 56  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 235
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 236 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 415
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 416 AKSXXXXXXXXXXXXXXXXXXXXXXPSFIVRLDSGKHIDFSLKSPFXGGRPG 571
           AKS                      PSF+VRLDS KHIDFSLKSPF GGRPG
Sbjct: 121 AKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPG 172


>AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p
           protein.
          Length = 137

 Score =  232 bits (568), Expect = 3e-61
 Identities = 112/123 (91%), Positives = 118/123 (95%)
 Frame = +2

Query: 56  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 235
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 236 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 415
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 416 AKS 424
           AKS
Sbjct: 121 AKS 123


>AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB,
           isoform B protein.
          Length = 137

 Score =  232 bits (568), Expect = 3e-61
 Identities = 112/123 (91%), Positives = 118/123 (95%)
 Frame = +2

Query: 56  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 235
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 236 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 415
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 416 AKS 424
           AKS
Sbjct: 121 AKS 123


>X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal protein
           protein.
          Length = 197

 Score =  152 bits (368), Expect = 4e-37
 Identities = 93/184 (50%), Positives = 110/184 (59%), Gaps = 1/184 (0%)
 Frame = +2

Query: 56  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 235
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGL+  R V  VKY LA+IRK ARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLQQARSV-AVKYALAKIRKVARE 59

Query: 236 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 415
           LLTL+EKD KRLF+G +L+RRLVRIGVL +   +     G +    L         +AGL
Sbjct: 60  LLTLDEKDAKRLFQGKSLVRRLVRIGVL-KSPHEARLRAGSEDSGLLGASSADAGVQAGL 118

Query: 416 AKSXXXXXXXXXXXXXXXXXXXXXXPSFIVRLDSGKHI-DFSLKSPFXGGRPGTCQEEEP 592
           AKS                      PSF+V     +   +FSLK P    RP   ++EE 
Sbjct: 119 AKSIHHARVLIRQRTFVLASRWSTIPSFVVTPGLPEATSNFSLKMPLR-TRPSRSRQEEE 177

Query: 593 PPGT 604
           P  T
Sbjct: 178 PART 181


>AY069336-1|AAL39481.1|  258|Drosophila melanogaster LD05259p
           protein.
          Length = 258

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 379 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCPXA 477
           A   DA V  W  +V P C+N + A  +SCP A
Sbjct: 127 AYDRDARVCMWADQV-PECKNEEVANGFSCPAA 158


>AE014297-401|AAF51920.1|  258|Drosophila melanogaster CG10287-PA
           protein.
          Length = 258

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 379 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCPXA 477
           A   DA V  W  +V P C+N + A  +SCP A
Sbjct: 127 AYDRDARVCMWADQV-PECKNEEVANGFSCPAA 158


>AF070734-1|AAD09748.1|  218|Drosophila melanogaster Gasp precursor
           protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 391 DAGVQSWPGEVHPSCQNFDPAKAYSCPXA 477
           DA V  W  +V P C+N + A  +SCP A
Sbjct: 131 DARVCMWADQV-PECKNEEVANGFSCPAA 158


>AY058781-1|AAL14010.1|  585|Drosophila melanogaster SD07191p
           protein.
          Length = 585

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 457 PXPDQNSGMMDGLRQASFEHLRLQTTLQEV---LNLQTKHIIEFHLFFIQYSNTNQ 299
           P   + +  +  LRQ   E+ RLQ  LQE    LNLQT+   EF    +Q S T++
Sbjct: 408 PQEAEGTLQLSTLRQ---ENERLQRELQEARAELNLQTRRASEFEQQLLQLSETSR 460


>AE014296-3712|AAF51856.1|  585|Drosophila melanogaster CG11238-PA
           protein.
          Length = 585

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 457 PXPDQNSGMMDGLRQASFEHLRLQTTLQEV---LNLQTKHIIEFHLFFIQYSNTNQ 299
           P   + +  +  LRQ   E+ RLQ  LQE    LNLQT+   EF    +Q S T++
Sbjct: 408 PQEAEGTLQLSTLRQ---ENERLQRELQEARAELNLQTRRASEFEQQLLQLSETSR 460


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,337,197
Number of Sequences: 53049
Number of extensions: 566584
Number of successful extensions: 1526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)