Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_N23
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 30 0.64
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437... 29 1.1
08_02_0604 - 19215017-19215101,19215870-19216021,19216591-192166... 29 1.9
01_06_0231 + 27727110-27727206,27727315-27727447,27727491-277275... 29 1.9
01_03_0108 - 12628711-12629178 29 1.9
08_02_0484 + 17665714-17666877 28 3.4
02_01_0402 - 2934074-2937217 28 3.4
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440... 27 4.5
12_02_0037 - 12613686-12614318,12614792-12614878,12614985-126151... 27 5.9
05_05_0093 + 22336593-22337198,22338123-22339076 27 5.9
05_04_0343 - 20437780-20438009,20438576-20438666 27 5.9
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 27 7.8
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 30.3 bits (65), Expect = 0.64
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 165 LWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT 266
LW EHF L G + PHR + IG DS+ T
Sbjct: 67 LWSIEHFGLRTGLRRPLPHRHLRVSDIGIDSTST 100
>01_05_0769 -
25042022-25042447,25042856-25043234,25043714-25043763,
25044222-25044442,25045085-25045385
Length = 458
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 128 SAANAIALGAMAVVAVGTFLFTWWKERKVPPPHGAQG 238
+AA A A+ A+ +AV T + WW R++ AQG
Sbjct: 14 AAAAAAAVAALLWLAVSTLEWAWWTPRRLERALRAQG 50
>08_02_0604 -
19215017-19215101,19215870-19216021,19216591-19216614,
19216656-19216884,19217061-19217177,19219249-19219311,
19219887-19220125
Length = 302
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +2
Query: 137 NAIALGAM---AVVAVGTFLFTWWKERKVP 217
N I +G++ A+V VG +LF W K R++P
Sbjct: 269 NDITIGSLLGTALVIVGLYLFLWAKAREIP 298
>01_06_0231 +
27727110-27727206,27727315-27727447,27727491-27727553,
27729069-27729140,27729640-27729783,27729868-27729990,
27730102-27730157,27730249-27730635,27731176-27731366,
27731498-27731630,27731715-27731869,27732188-27732379,
27732490-27732750
Length = 668
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 128 SAANAIALGAMAVVAVGTFLFTWWKERKVPPP 223
++ANA +V + GT F+ +KE KVPPP
Sbjct: 259 ASANAPVPAVASVPSTGTGSFSAFKEIKVPPP 290
>01_03_0108 - 12628711-12629178
Length = 155
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 327 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSFH 196
KHK+V ++++ K+ T LR+ P A CG GTF++ H
Sbjct: 94 KHKKVKLAVLQFYKVD-DATGKVTRLRKECPNAECGAGTFMANH 136
>08_02_0484 + 17665714-17666877
Length = 387
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 143 IALGAMAVVAVGTFLFTWWKERKVPPPHGAQG 238
+A+ A AVVA+ LF W+ ++V G G
Sbjct: 14 VAVAAAAVVALAVALFLLWRNKRVARAGGGAG 45
>02_01_0402 - 2934074-2937217
Length = 1047
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -1
Query: 100 SWSSQNGNLFVATKNDNDC---DGTLCTGTRXENE 5
+W S++G L ++ KN DC +G C R NE
Sbjct: 50 AWLSKDGGLGMSWKNGTDCCVWEGITCNPNRTVNE 84
>04_04_0111 -
22842337-22842648,22843008-22843402,22843732-22844073,
22844154-22844282,22844402-22844514,22844596-22844667,
22844783-22844859,22844978-22845052,22845058-22845121,
22845332-22845403,22845496-22845628,22846859-22846961
Length = 628
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 119 SNTSA-ANAIALGAMAVVAVGTFLFTWWKERKVPPPH 226
S T A A +A A + AV F WW+ RK P H
Sbjct: 239 SKTGAIAGGVAAAAALLFAVPAIGFAWWRRRK-PEEH 274
>12_02_0037 -
12613686-12614318,12614792-12614878,12614985-12615176,
12617246-12617371,12617479-12617565,12617994-12618458,
12618868-12618947,12619739-12619751
Length = 560
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 284 YFSAALCSATIFADSRLELRAVGEPSFL 201
YF A LC T+ +S + + AV P FL
Sbjct: 404 YFVATLCMCTLLVESMMMIIAVIVPDFL 431
>05_05_0093 + 22336593-22337198,22338123-22339076
Length = 519
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 164 PPSRLVL*H*QRMCCXPCELEFLVIAKW 81
PP R V+ H R+ C P L LVI W
Sbjct: 227 PPFRPVIFHDGRLVCRPTPLMSLVILLW 254
>05_04_0343 - 20437780-20438009,20438576-20438666
Length = 106
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 143 IALGAMAVVAVGTFLFTWWKERKVPPPH 226
+ LG AVV + FLF +W+++K H
Sbjct: 58 VLLGIGAVVLLSFFLFKYWQKKKREEQH 85
>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 113 RXSNTSA-ANAIALGAMAVVAVGTFLFTWWKERK 211
R S T A + +A GA + + F WW+ RK
Sbjct: 1256 RSSRTGAISGGVAAGAALLFNIPAIGFAWWRRRK 1289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,621,215
Number of Sequences: 37544
Number of extensions: 180319
Number of successful extensions: 492
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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