Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_N20
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   234   4e-64
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   230   4e-63
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   116   1e-28
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    83   1e-18
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.27 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.63 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   5.9  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   5.9  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   5.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  234 bits (572), Expect = 4e-64
 Identities = 114/123 (92%), Positives = 114/123 (92%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 243
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 244 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRXXIKNMITGTLSGLIAAVLIVXAG 423
           DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHR  IKNMITGT S    AVLIV AG
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGT-SQADCAVLIVAAG 119

Query: 424 TGE 432
           TGE
Sbjct: 120 TGE 122


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  230 bits (563), Expect = 4e-63
 Identities = 112/123 (91%), Positives = 113/123 (91%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 243
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 244 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRXXIKNMITGTLSGLIAAVLIVXAG 423
           DKLKAERERGITIDIALWKFET+KYYVTIIDAPGHR  IKNMITGT S    AVLIV AG
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGT-SQADCAVLIVAAG 119

Query: 424 TGE 432
            GE
Sbjct: 120 IGE 122


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  116 bits (278), Expect = 1e-28
 Identities = 58/66 (87%), Positives = 58/66 (87%)
 Frame = +1

Query: 235 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRXXIKNMITGTLSGLIAAVLIV 414
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHR  IKNMITGT S    AVLIV
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGT-SQADCAVLIV 59

Query: 415 XAGTGE 432
            AGTGE
Sbjct: 60  AAGTGE 65


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 83.0 bits (196), Expect = 1e-18
 Identities = 42/50 (84%), Positives = 42/50 (84%)
 Frame = +1

Query: 283 DIALWKFETSKYYVTIIDAPGHRXXIKNMITGTLSGLIAAVLIVXAGTGE 432
           DIALWKFETSKYYVTIIDAPGHR  IKNMITGT S    AVLIV AGTGE
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGT-SQADCAVLIVAAGTGE 49


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 76  KTHINIVVIGHVDSGKST 129
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 85  INIVVIGHVDSGKST 129
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 166 DKRTIEKFEKEAQEMG 213
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 166 DKRTIEKFEKEAQEMG 213
           DK+   KFE+EA+++G
Sbjct: 112 DKKFRVKFEEEAKKLG 127


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 166 DKRTIEKFEKEAQEMG 213
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,700
Number of Sequences: 438
Number of extensions: 2116
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)