Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_N19
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    26   8.2  

>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 389 FFVSSFCFSKRYXFSIFLFCCR-SISLTTPSCIFSLSACCFR*TYDTIPIVIEQ 231
           FF     FS  Y FS  L C   S   + P C  S S  C   T +   IVIE+
Sbjct: 22  FFCCQQIFSIFYNFSPGLSCDDPSFQFSKPKCKLSKSEICSELTANCSKIVIEE 75


>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 366 LQKVXIFYLSLLLPFHISHYSFMHLFPVGLL 274
           LQK+ IF + ++  F  +H  F   F VGLL
Sbjct: 63  LQKIEIFQIPMIDMFLTTHLDFTLCFFVGLL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,135,970
Number of Sequences: 27780
Number of extensions: 117890
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)