Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_N18
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 190 1e-49
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 190 1e-49
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 184 5e-48
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.57
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 3.0
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.0
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 5.3
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 7.0
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 7.0
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 25 9.2
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 190 bits (463), Expect = 1e-49
Identities = 87/142 (61%), Positives = 104/142 (73%)
Frame = +3
Query: 42 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 221
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 222 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 401
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 402 XXFCLKPGRNYCHVGRLSHEIG 467
LKPGR YC VGRLS E+G
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVG 147
Score = 28.7 bits (61), Expect = 0.57
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +1
Query: 460 KLGWKYRDVVRKLEDQK 510
++GWKY D+V KLE+++
Sbjct: 145 EVGWKYSDIVSKLEERR 161
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 190 bits (463), Expect = 1e-49
Identities = 87/142 (61%), Positives = 104/142 (73%)
Frame = +3
Query: 42 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 221
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 222 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 401
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 402 XXFCLKPGRNYCHVGRLSHEIG 467
LKPGR YC VGRLS E+G
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVG 147
Score = 29.1 bits (62), Expect = 0.43
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +1
Query: 460 KLGWKYRDVVRKLEDQK 510
++GWKY D+V KLE+++
Sbjct: 145 EVGWKYNDIVAKLEERR 161
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 184 bits (449), Expect = 5e-48
Identities = 82/142 (57%), Positives = 102/142 (71%)
Frame = +3
Query: 42 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 221
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 222 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 401
NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 402 XXFCLKPGRNYCHVGRLSHEIG 467
LKP R YC +GRLS E+G
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVG 147
Score = 27.9 bits (59), Expect = 0.99
Identities = 8/17 (47%), Positives = 16/17 (94%)
Frame = +1
Query: 460 KLGWKYRDVVRKLEDQK 510
++GWKY+++V KLE+++
Sbjct: 145 EVGWKYKNIVSKLEERR 161
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.57
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 69 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 173
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -2
Query: 152 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 15
D+ A N + L RQ QQM T +YGL+ KAR N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 355 GHPSYVRSLLRAFLPRSVLCGIMP 284
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 253 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRRTLAMTA 89
AL+ G ++L+R+ND + +KK+ + LI ++ T R L T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 177 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 293
N+ + MS KRC RG HF + L+ ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 334 SLLRAFLPRSVLCGIMPLTVFHRILDGAL 248
S L AFLP+ LC ++PL + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 235 PRAGFTLHLLRRNDISLSLFLKKLP 161
P G H+LR + LS +LKK P
Sbjct: 219 PNLGIFTHILRNSRNDLSNYLKKRP 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,349
Number of Sequences: 5004
Number of extensions: 43113
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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