Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_N18
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   196   1e-50
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   196   1e-50
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  196 bits (477), Expect = 1e-50
 Identities = 89/148 (60%), Positives = 111/148 (75%)
 Frame = +3

Query: 30  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 209
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 210 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 389
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 390 XXXXXXFCLKPGRNYCHVGRLSHEIGME 473
                 F L+P R +C VGRLSHE+G +
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQ 148


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  196 bits (477), Expect = 1e-50
 Identities = 89/148 (60%), Positives = 111/148 (75%)
 Frame = +3

Query: 30  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 209
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 210 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 389
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 390 XXXXXXFCLKPGRNYCHVGRLSHEIGME 473
                 F L+P R +C VGRLSHE+G +
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQ 148


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = -1

Query: 459 HGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 316
           H     H   +G V  R H E     H   +  E GTHH +     H+
Sbjct: 389 HHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
          protein F25D1.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 24 MTGFSNKAIVIDGRGHLLGRLAAVI 98
          M  FS K+++I G  + +GR AAVI
Sbjct: 1  MARFSGKSVIITGSSNGIGRSAAVI 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,345,357
Number of Sequences: 27780
Number of extensions: 251427
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)