Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_N17
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 61 1e-10
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 46 4e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 43 4e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 40 4e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 5e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 37 0.002
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 37 0.002
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.004
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.007
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 35 0.009
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.009
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 35 0.012
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.016
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 34 0.021
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 33 0.027
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.027
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.036
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 33 0.048
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.063
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 32 0.063
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 32 0.063
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.083
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.11
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.15
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 30 0.25
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.34
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.34
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.34
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.34
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.44
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.44
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.44
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.59
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.59
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.0
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 28 1.4
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 1.8
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 27 2.4
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.4
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 27 2.4
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 3.1
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 3.1
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 3.1
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 3.1
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 26 4.1
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 26 5.5
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 5.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 7.2
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 9.5
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 25 9.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.5
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.5
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 61.3 bits (142), Expect = 1e-10
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Frame = +3
Query: 288 MYALFSAMGKIESCKLIAN-----RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXA 452
++ FSA GKI SCK+ + +GYGFV ++ E A A NG+L+ K + V
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHH 243
Query: 453 LLNPE--NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN 584
+ E +KV +N+YI NL ++T + + LF FG IT+
Sbjct: 244 VSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Score = 55.6 bits (128), Expect = 6e-09
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Frame = +3
Query: 168 SNNKRTMQNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIES---CKLI 338
S + T + + G A T+ S L V + +T M++ LF+++G + S C+
Sbjct: 59 STSTPTNASSVATPSGTAPTSAS---LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDA 115
Query: 339 ANR---GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXALLNPENKVSHKPDTESNLY 509
R GY +V + ED EKA N L++G+ ++ + +P + K T N++
Sbjct: 116 VTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLR---KMGT-GNVF 171
Query: 510 ISNLPPDMTLERLNTLFSPFGNITNSRVS 596
I NL P + + L+ FS FG I + +V+
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVA 200
Score = 53.2 bits (122), Expect = 3e-08
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Frame = +3
Query: 240 TKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN-----RGYGFVEYEKHEDAEKARAA 404
T + + + +T LF G+I S L+ + RG+GFV Y HE A+KA
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 405 FNGLLMQGKTLKVSXALLNPENKVSHKPDTES------------NLYISNLPPDMTLERL 548
N +GK L V A E + + E NL+I NL ++ ERL
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 549 NTLFSPFGNITNSRV 593
FS FG IT++++
Sbjct: 381 KAEFSAFGTITSAKI 395
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 601 GIGFVCYETRQQAEDAI 651
G GFVCY T ++A A+
Sbjct: 405 GFGFVCYTTPEEANKAV 421
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/74 (37%), Positives = 35/74 (47%)
Frame = +3
Query: 231 VSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFN 410
+S T+L V IP TR+ M F G+I CKL+ G+GFVE E DA F
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLM--NGFGFVEVEDARDARDIVNDFQ 58
Query: 411 GLLMQGKTLKVSXA 452
G G + V A
Sbjct: 59 GKEFMGSRIVVEPA 72
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 342 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTL 437
N G G VE+ ED A + NG +++G+ +
Sbjct: 133 NPGAGVVEFSTEEDMRNALTSLNGEVIKGQAV 164
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 42.7 bits (96), Expect = 4e-05
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +3
Query: 246 LMVNYIPELMTRDMMYALFSAMGKIESCKLIA------NRGYGFVEYEKHEDAEKARAAF 407
L V + L+ ++Y FSA+G++ +A ++GYGFV Y+ E A+ A A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 408 NGLLMQGKTLKVSXA 452
N + K + VS A
Sbjct: 161 NNQFLMNKPITVSYA 175
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 39.5 bits (88), Expect = 4e-04
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +3
Query: 348 GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVS------XALLNPENKVSHKPDTESNLY 509
G+GFVE++ A A A NG ++ G L++ A + S KP + +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKP-KGTKIL 724
Query: 510 ISNLPPDMTLERLNTLFSPFGNITNSRVSQXY 605
I NLP + T + + +L +G + + RV + +
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPKKF 756
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 492 TESNLYISNLPPDMTLERLNTLFSPFGNI 578
+++ L + N P + E L +LFSPFG +
Sbjct: 504 SDNVLLVKNFPYGTSAEELTSLFSPFGEL 532
Score = 26.2 bits (55), Expect = 4.1
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Frame = +3
Query: 183 TMQNDMENGGGDANTNV---SPTK-LMVNYIPELMTRDMMYALFSAMGKIESCKLIANR- 347
+M EN + N+ S TK L + + D + +LF G++E + ++
Sbjct: 300 SMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKK 359
Query: 348 -----GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXA 452
G+ ++++ +DA +A + QG+ L V A
Sbjct: 360 TNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPA 399
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.1 bits (87), Expect = 5e-04
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Frame = +3
Query: 234 SPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKA 395
S + L V + +D + FS +G I+ ++ N RGYGFV + EDA++A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 396 RAAFNGLLMQGKTLKVSXA-------LLNPENKVSHK---PDTESNLYISNLPPDMTL-E 542
+ G+ L++ A + +NK K D L I NLP + +
Sbjct: 63 AKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQ 122
Query: 543 RLNTLFSPFGNITNSRV 593
L FS FG + ++
Sbjct: 123 HLEPHFSKFGKVREIKI 139
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.1 bits (82), Expect = 0.002
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Frame = +3
Query: 231 VSPTKLMVNYIPELMTRD--MMYALFSAMGKIESCKLIA------NRGYGFVEYEKHEDA 386
+ P L V + + + + + LFS G+I+SC L + ++GYGFV + +A
Sbjct: 416 IDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEA 475
Query: 387 EKARAAFNGLLMQGKTLKVSXALLNPENK 473
+A NG+L K L V+ A + K
Sbjct: 476 VQAINTLNGVLFGKKRLFVNYAEKREDRK 504
Score = 33.1 bits (72), Expect = 0.036
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 456 LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNIT 581
L+ +NK S K E ++Y+ NLP L+ LF PFGN +
Sbjct: 7 LSEKNKRSTKK-CEISIYVGNLPSTCQSSDLHELFEPFGNFS 47
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 351 YGFVEYEKHEDAEKARAAFNGLLMQGKTLKV 443
+ F+ +E A+ A A+ NG QG TLKV
Sbjct: 68 FAFITFENKCSADNAIASLNGSSFQGNTLKV 98
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 37.1 bits (82), Expect = 0.002
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Frame = +3
Query: 312 GKIESCKLIAN------RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXALLNPENK 473
GK+ S K I + +GYGF +E+ + A +A Q K S + +
Sbjct: 320 GKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAMTLCGYQCSFAKESFSA-----R 374
Query: 474 VSHKPDTES-NLYISNLPPDMTLERLNTLFSPFGNITN 584
+ DTES NLYISNLP ++TLF P I+N
Sbjct: 375 LQSLQDTESTNLYISNLPLHWNESDISTLFKPSKIISN 412
Score = 29.1 bits (62), Expect = 0.59
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 456 LNPENKVSHKPDTES--NLYISNLPPDMTLERLNTLFSPFGNITNSR 590
++ +NK S+ T N+YI LPP+ + E L + FG +++S+
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSK 326
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Frame = +3
Query: 222 NTNVSPTKLMVNYIPE--LMTRDMMYALFSAMGKIESCKLIA------NRGYGFVEYEKH 377
N+ + P+ L V + + + + + LFS G I S L ++GYGFV + +
Sbjct: 376 NSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQI 435
Query: 378 EDAEKARAAFNGLLMQGKTLKVSXA 452
E A +A+ NG+++ K + V A
Sbjct: 436 EAAVRAKDTLNGMMVGKKRIFVCFA 460
Score = 31.9 bits (69), Expect = 0.083
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 474 VSHKPDTESNLYISNLPPDMTL--ERLNTLFSPFGNITNSRVS 596
+ + P SNLY+ NL + +L LFSPFG+I +S ++
Sbjct: 374 IPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLA 416
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +3
Query: 351 YGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXALLNPENKVSHK 485
YGFV++ E E+ G+ + + L + ++NP K
Sbjct: 72 YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKLTDKK 116
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.5 bits (78), Expect = 0.007
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Frame = +3
Query: 243 KLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKARAA 404
K+ V +P T + F+ G++ L+ + RG+GFV YE +E A +A +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE-NESAVEATMS 306
Query: 405 FNGLLMQGKTLKVSXALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN 584
+ + GK ++V A P+ + D + Y N P + +N +G +T
Sbjct: 307 QPYITIHGKPVEVKRA--TPKASLRDSHDRHQHGYHGNANP-YYAQNMNM----YGGMTP 359
Query: 585 SRVSQXYR 608
+ ++Q YR
Sbjct: 360 AMMAQYYR 367
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 35.1 bits (77), Expect = 0.009
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Frame = +3
Query: 171 NNKRTMQNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLI---- 338
NN+ T + E + L V+ I M D + +FS G + +++
Sbjct: 78 NNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV 137
Query: 339 --ANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXA 452
A+RG+GF+ + E+A A N G+ L V A
Sbjct: 138 TKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 462 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 593
P++ + ++L++S + M + L +FS FG +T+ R+
Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 35.1 bits (77), Expect = 0.009
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +3
Query: 273 MTRDMMYALFSAMGKIESCKL-----IANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTL 437
+T ++Y F G+I S L +R Y FVE+++ EDA++A N ++ + +
Sbjct: 17 VTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMNYSILCDRCI 76
Query: 438 KVSXA 452
+VS A
Sbjct: 77 RVSPA 81
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +3
Query: 345 RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXALLNPENKVSHKPDTESNLYISNLP 524
R Y FV+++ +DA KA + ++ G+ +++ A +N ++S P
Sbjct: 121 RPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNRTIRISSAPH----------Q 170
Query: 525 PDMTLERLNTLFSPFGNI 578
P +T + ++ L P+G +
Sbjct: 171 PYITKKDIDNLLEPYGEV 188
Score = 29.9 bits (64), Expect = 0.34
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +3
Query: 231 VSPTKLMVNYI-PELMTRDMMYALFSAMGKIESCKLI---ANRGYGFVEYEKHEDAEKAR 398
+ P + V + P T ++ LFS GK+ CK+I + F+ ++ + A A
Sbjct: 362 IDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAV 421
Query: 399 AAFNGLLMQGKTLKVSXALLNPENKVS 479
Q K L+V L P + S
Sbjct: 422 CGKTRSPHQKKPLRVEFRQLRPMQQFS 448
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.3 bits (75), Expect = 0.016
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Frame = +3
Query: 168 SNNKRTMQNDMENGGGDANTNV-SPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN 344
++N+ + N G + NV T L + + +T + +++ +GK KLI N
Sbjct: 68 ASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRN 127
Query: 345 R------GYGFVEYEKHEDAEKARAAFNGLLMQGKTL-KVSXALLNPENKVSHKPDTESN 503
R GY FVE+ +A A + N + L K++ A + S +E +
Sbjct: 128 RYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYS 187
Query: 504 LYISNLPPDMTLERLNTLFS 563
+++ +L P++ + +LF+
Sbjct: 188 IFVGDLSPNVNEFDVYSLFA 207
Score = 29.9 bits (64), Expect = 0.34
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 204 NGGGDANTNVSPTKLMVNYIPEL---MTRDMMYALF-SAMGKIESCKLIAN------RGY 353
+GGG ++S ++ +L + +Y+LF S +S K++ + RGY
Sbjct: 171 SGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGY 230
Query: 354 GFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXALLNPENK 473
GFV + D + A A G + + ++V L P++K
Sbjct: 231 GFVRFTDENDQKSALAEMQGQICGDRPIRV--GLATPKSK 268
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.9 bits (74), Expect = 0.021
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 342 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXALLNPENKVSHKPDTESNLY---I 512
+R YGFV + ++ + A G L QG+ L++S A +P+++ S D+ +
Sbjct: 223 SRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA--SPKSRASIAADSALGIVPTST 280
Query: 513 SNLPPDMTLERLNTL 557
SN P+ L ++ L
Sbjct: 281 SNRQPNQDLCSMDPL 295
Score = 32.7 bits (71), Expect = 0.048
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 240 TKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLL 419
T + V + ++ + F G+I + K+ +G GFV+Y + AEKA G L
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGAL 356
Query: 420 M 422
+
Sbjct: 357 V 357
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 33.5 bits (73), Expect = 0.027
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 246 LMVNYIPELMTRDMMYALFSAMGKIESCKL---IANRGYGFVEYEKHEDAEKARAAFNGL 416
L + + +T + MY LF G + +L + RG FV YE +DA +A +G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 417 LMQGKTLKVSXALLNPE 467
+ L V NPE
Sbjct: 74 NFMDRYLVVH--YYNPE 88
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.5 bits (73), Expect = 0.027
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 255 NYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKA 395
++I + +T + + + G+IES K + NR GFV Y +A KA
Sbjct: 505 SHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKA 551
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 411 GLLMQGKTLKVSXALLNP--ENKVSHKPDTES--NLYISNLPPDMTLERLNTLFSPFGNI 578
G + G+ LK++ A +P E+ + +T + N++I NLP + + F FG I
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 579 TNSRV 593
+ ++
Sbjct: 326 EHIKI 330
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.1 bits (72), Expect = 0.036
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 468 NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSR 590
+++S + ++NLY++N PP + LFS +GN+ + R
Sbjct: 656 HEISVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVR 696
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 480 HKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 578
H+ E + ++NLP D++ L F GNI
Sbjct: 584 HRNREELTVLVTNLPSDISENELKIFFKDCGNI 616
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 32.7 bits (71), Expect = 0.048
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Frame = +3
Query: 234 SPTKLMVNYI-PELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFN 410
S ++L + ++ + +++ ++ +F G + L AN YGFV++ +ED +A A
Sbjct: 361 SASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKAN--YGFVQFFTNEDCARALNAEQ 418
Query: 411 GLLMQGKTLKVSXALLNP------ENKVSHKPDTESNLY---ISNLP 524
G ++G+ L + + + EN T+SN Y I NLP
Sbjct: 419 GNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLP 465
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 32.3 bits (70), Expect = 0.063
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Frame = +3
Query: 246 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAF 407
+ V+ + +T +Y F G + +++ ++ G +VE+ HED+ +A A
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIAL 300
Query: 408 NGLLMQGKTLKVSXALLNPENKVSHKPDTES---------NLYISNLPPDMTLERLNTLF 560
+G + G + V K + L +SN+ ++T E + +F
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIF 360
Query: 561 SPFGNI 578
PFG+I
Sbjct: 361 EPFGDI 366
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 219 ANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN-----RGYGFVEYEKHED 383
A+ + +L V+ I +T + + A+F G IE L + +G+G+++Y
Sbjct: 333 ASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPIS 392
Query: 384 AEKARAAFNGLLMQGKTLKV 443
A A NG + G+ ++V
Sbjct: 393 ARNALEKMNGFDLAGRNMRV 412
Score = 28.7 bits (61), Expect = 0.77
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 255 NYIPELMTRDMMYALFSAMGKIESCKLIANR-GYGFVEYEKHEDAEKARAAFNGLLMQGK 431
N++ EL +D+ GK+ ++ N G FV++E + AEKA + G+
Sbjct: 524 NWVQEL-EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGR 582
Query: 432 TLKVS 446
T+K S
Sbjct: 583 TIKAS 587
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 32.3 bits (70), Expect = 0.063
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 8/132 (6%)
Frame = +3
Query: 222 NTNVSPTKLMVNYIPELMTRDMMYALFSAM--GKIESCKLIANRGYGFVEY--EKHEDAE 389
N P K + Y+ L + + S + G IES ++ + F+ + H A
Sbjct: 108 NNTTQPVKTV--YVGNLPPNTPIDEILSCVRTGPIESAWILPEKNCAFISFLDPSHATAF 165
Query: 390 KARAAFNGLLMQGKTLKVSXALLNPENKVSHKPDTES----NLYISNLPPDMTLERLNTL 557
AA L ++G +KV + N +S N+++ NLP +T + +
Sbjct: 166 FQDAALKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIRED 225
Query: 558 FSPFGNITNSRV 593
PFG I ++
Sbjct: 226 LEPFGPIDQIKI 237
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 408 NGLLMQGKTLKVSXALLN---PEN-KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN 575
+GL+++ + LK+ + P N ++ N+YI N +T+ERL F FG
Sbjct: 380 HGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGE 439
Query: 576 I 578
I
Sbjct: 440 I 440
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.3 bits (70), Expect = 0.063
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +3
Query: 300 FSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKV 443
F+ G IE +++ N+ GY FV +E+ D + A A GL++ G+ + V
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVV 173
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.9 bits (69), Expect = 0.083
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +3
Query: 297 LFSAMGKIESCKLIANRG------YGFVEYEKHEDAEKARAAFNGLLMQGKTLKV 443
+FS GKI SC++I ++ Y F+E++ E EKA +L+ + V
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 477 SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 593
+H E+ L++ L P E L +FS FG I + +V
Sbjct: 237 AHVAPPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQV 275
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 342 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXALLNPENKVSHKPDTESNL-YISN 518
++G+G V++E DA + NG G+ L++S A + + P S L ++
Sbjct: 319 SKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA--HYATPLPAVPTVLSGLPSVAY 376
Query: 519 LPPDMTLERLNTLFSPFGNITNS 587
PP M + N+ +P + TNS
Sbjct: 377 TPPVMHIPTTNSPLTP-QSFTNS 398
Score = 26.2 bits (55), Expect = 4.1
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +3
Query: 342 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSX---ALLNPENKVSHK-PDTESN-- 503
+RG G V ++A A + G+TL+V A E+ V H P +
Sbjct: 222 SRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDC 281
Query: 504 LYISNLPPDMTLERLNTLFSPFGNITNSRVS 596
+Y+ NLP + L LF+ G++ +R++
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIA 312
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.1 bits (67), Expect = 0.15
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Frame = +3
Query: 342 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXALLNPENKVSHKPDTESN------ 503
++GYG+V++E E A+ A AA + G+ + + + P N + N
Sbjct: 303 SKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLS 362
Query: 504 -----LYISNLPPDMTLERLNTLFSPFGNITNSRV 593
+++ NL + T + L+T F G+I + R+
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRL 397
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 411 GLLMQGKTLKVSXALLNPE-NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 578
G+ G+ S +N + N+ S P+ + +++SN+ P +T E+L F FG +
Sbjct: 64 GIPKSGRPFLKSLQTINYDYNENSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEV 120
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.9 bits (64), Expect = 0.34
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +3
Query: 246 LMVNYIPELMTRDMMYALFSAMGKIESC------KLIANRGYGFVEYEKHEDAEKARAAF 407
++V + +T++ + +F G I+ K N+GY ++EY H+ A A
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 408 NGLLMQGKTLKVS 446
N + G+ L VS
Sbjct: 161 NNAELDGEELFVS 173
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +3
Query: 246 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQ 425
L + I + ++ ++F G ++S L N +GF++ + + AEKA+ A +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPFA 467
Query: 426 GKTLK 440
T++
Sbjct: 468 DTTIR 472
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 29.9 bits (64), Expect = 0.34
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 225 TNVSPTK-LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARA 401
T PT L V +P ++ + FSA G + S ++++++ F+ ++ E A+
Sbjct: 581 TQHEPTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLE 640
Query: 402 AFNG 413
NG
Sbjct: 641 ELNG 644
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 345 RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXALLNPENKVSHKPDTESN 503
RG+GFV + ED +A NG + TL V A+ E+K + + + N
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFR-EDKQNDENEKNEN 309
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 489 DTESNLYISNLPPDMTLERLNTLFSPFGNI 578
D++ +YISNLP ++ +++ L PFG++
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDL 336
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 29.5 bits (63), Expect = 0.44
Identities = 26/107 (24%), Positives = 46/107 (42%)
Frame = +3
Query: 246 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQ 425
L V+ +P + ++ALFSA G ++ +++ V YE A AR A + +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSAIVARDALHNRPVF 61
Query: 426 GKTLKVSXALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSP 566
V L P + +++P N+ + PP T + + SP
Sbjct: 62 ENHGPVQVMLAKPSS--NYEP---GNITAAVSPPASTSSKDGVVCSP 103
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 504 LYISNLPPDMTLERLNTLFSPFGNI 578
LY+SNLP + ++ LFS +GN+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNV 26
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.5 bits (63), Expect = 0.44
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 252 VNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKARAAFN 410
V IP M + + +F G ++S +L+ + +GYGF EY H+ A A A N
Sbjct: 9 VGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY--HDPATAASAVRN 65
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.1 bits (62), Expect = 0.59
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +3
Query: 276 TRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAFNGLLMQGKTL 437
T + + LF+ G +++ L +R GY +EY E A+KA N L+ K L
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK-L 80
Query: 438 KVSXALLNPENK 473
+V A L P +
Sbjct: 81 EVDFAFLEPPER 92
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.1 bits (62), Expect = 0.59
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +3
Query: 243 KLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR-----GYGFVEYEKHEDAEKARAAF 407
+L V + + + +Y FS + K++ +R G+GFV ++ + KA
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 408 NGLLMQGKTLKVSXALLNPE-NKVSHK 485
NG + + +K+S A + + N+V+ K
Sbjct: 91 NGKYIGSRPVKLSRATSDVKPNEVNEK 117
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 348 GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKV 443
G GFV + HEDA A AFNG + + L++
Sbjct: 287 GTGFVLFASHEDAADA-LAFNGYCLGDRMLEI 317
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +3
Query: 276 TRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDA 386
T + +YALFS G+I + +R G+ FVEY +++DA
Sbjct: 44 TEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDA 86
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 1.8
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 8/117 (6%)
Frame = +3
Query: 222 NTNVSPTK--LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRG------YGFVEYEKH 377
N N+ K L V +P M FS G + ++ NR Y F+E+E
Sbjct: 97 NKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESL 156
Query: 378 EDAEKARAAFNGLLMQGKTLKVSXALLNPENKVSHKPDTESNLYISNLPPDMTLERL 548
+ A + L+ GK L+ + PE++V +++ + P T+ RL
Sbjct: 157 DVANVVAETMHNYLLYGKLLQCK---VIPEDQVHENMFKGADVPFKRI-PHATIARL 209
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 498 SNLYISNLPPDMTLERLNTLFS 563
+ +Y+ NLPP + E L LFS
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFS 447
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +3
Query: 246 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANR-----GYGFVEYEKHEDAEKARAAFN 410
L + IP+ + M + GK+ S + +A+ +GF E+E +E +A A N
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSMTSFGFAEFESNEQFSRALEALN 200
Query: 411 GLLM 422
++
Sbjct: 201 DFVV 204
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 454 SSTLRTKSATSPTPNPTCTSAIYHQT*PSKDSTLFSVLSVTSRIAA 591
+ST KSA SP PNP +++ + + ST+ S T +AA
Sbjct: 77 TSTSTPKSAASPAPNP--PASVPEKKVEAPSSTVAESTSTTQTVAA 120
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +3
Query: 357 FVEYEKHEDAEKARAAFNGLLMQGKTLKVSXALLNPENKVSHKPDTESNLYISNLPPDMT 536
F E E + A + L +++V+ ++L +++ + +E+N +SN PP +T
Sbjct: 146 FFHSEAGERPTPSVGAPSSLASSMDSVRVAPSMLAASHQIVPQY-SENNPRVSNEPPRVT 204
Query: 537 LERLNTLFSPFGNITNSRVS 596
+E N PF S +S
Sbjct: 205 IE--NASLKPFSGYIKSHMS 222
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 342 NRGYGFVEYEKHEDAEKARAAFNGLLMQ--GKTLKVSXALLNP 464
+R + FVEYE DAE A +G ++ G L+V A P
Sbjct: 46 SRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAKQPP 88
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 342 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSXA 452
+RG+G+VE+E D A A +G + G+ ++++ A
Sbjct: 132 SRGFGYVEFET-ADTLSAALALSGEDLMGRPVRITVA 167
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 28 ELVNPAT-PSFSYDNNFCVCSLFFFYNLNEVNNV 126
E+ AT PS NFC +F F N NE NN+
Sbjct: 764 EITRKATEPSIRIICNFCRKPIFPFSNRNECNNL 797
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -2
Query: 496 SVSGLWLTLFSGLRSAXDTFSVLPCISR 413
SV+ W++LFS ++S+ D + C+++
Sbjct: 171 SVAQYWVSLFSNVQSSLDDLFSIACLTK 198
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 410 VECSPRLLSVLMFFILNKAVAAIRYQLAALYFTH 309
V CS + + +L FF L K R L LYF++
Sbjct: 628 VRCSSKSIGLLFFFPLVKVCGVPRDTLQWLYFSN 661
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 429 KTLKVSXALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLF 560
K K + +N + + ES + +SNLP D+T ++ LF
Sbjct: 32 KPTKNAKPAVNTASALKSVISEESKIIVSNLPTDVTEAQVKELF 75
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +3
Query: 426 GKTLKVSXALLNPENKVSHK-PDTESNL----YISNLPPDMT-LERLNTLFSPFGNITNS 587
G ++ ++ + N H DTES L +I + +T + ++TL +PFGN +NS
Sbjct: 96 GYAPSITRSIKSISNNTEHLGADTESYLSANDFIDSTSEALTKIVDVDTLSAPFGNDSNS 155
Query: 588 R 590
R
Sbjct: 156 R 156
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 504 LYISNLPPDMTLERLNTLFSPFGNI 578
+Y+S +PP M +L + S +G I
Sbjct: 124 IYLSRIPPYMAPNKLRQILSQYGKI 148
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 468 NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNS 587
++ S P +YI LP D+T++ + +F G I +
Sbjct: 100 SEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKN 139
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Frame = +1
Query: 13 VPCN-----DELVNPATPSFSYDNNFCVCSLFFFYNLNEVNNVQC--CEFYYY 150
+PCN DE + + +++ FC+C + E QC CE +++
Sbjct: 97 IPCNLRKSVDECGSENDYNHNFEGRFCICDTVYNPETEEGTMFQCILCEDWFH 149
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 423 QGKTLKVSXALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFG 572
Q + L+V LL EN+V +YI +L PD+ + N+LF G
Sbjct: 1382 QKEALRVLGTLLLQENRVY----AAHLVYILSLSPDVCSNKSNSLFELVG 1427
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 198 YRFALFFYCYYTTENKIVIKLTALDVVH 115
+RF +Y Y TE K+V + +V H
Sbjct: 91 FRFTAGYYLYLCTERKVVAVIGGHNVYH 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,041
Number of Sequences: 5004
Number of extensions: 51542
Number of successful extensions: 255
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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