Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_N14
(366 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 154 2e-38
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 154 2e-38
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 72 1e-13
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 72 1e-13
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 49 9e-07
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 46 8e-06
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 40 4e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 40 7e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 40 7e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 40 7e-04
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 39 0.001
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 34 0.027
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 34 0.027
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.083
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.083
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.083
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.083
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.083
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.083
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.19
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 29 0.77
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 1.0
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 29 1.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 1.0
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 29 1.0
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 27 5.4
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 27 5.4
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 27 5.4
Z78410-8|CAB01642.1| 556|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z78410-7|CAB01635.1| 652|Caenorhabditis elegans Hypothetical pr... 26 7.2
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 26 7.2
U04995-1|AAA56868.1| 652|Caenorhabditis elegans prohormone conv... 26 7.2
Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical pr... 26 9.5
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 26 9.5
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 26 9.5
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 154 bits (373), Expect = 2e-38
Identities = 72/84 (85%), Positives = 81/84 (96%)
Frame = +2
Query: 95 LDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQD 274
+DEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+
Sbjct: 6 VDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQE 65
Query: 275 RCITIKSTAISMFFELEEKXLVFI 346
RCITIKSTAIS+FFELE+K L F+
Sbjct: 66 RCITIKSTAISLFFELEKKDLEFV 89
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 154 bits (373), Expect = 2e-38
Identities = 72/84 (85%), Positives = 81/84 (96%)
Frame = +2
Query: 95 LDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQD 274
+DEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+
Sbjct: 6 VDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQE 65
Query: 275 RCITIKSTAISMFFELEEKXLVFI 346
RCITIKSTAIS+FFELE+K L F+
Sbjct: 66 RCITIKSTAISLFFELEKKDLEFV 89
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 71.7 bits (168), Expect = 1e-13
Identities = 32/63 (50%), Positives = 47/63 (74%)
Frame = +2
Query: 131 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 310
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 311 FFE 319
E
Sbjct: 79 LCE 81
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 71.7 bits (168), Expect = 1e-13
Identities = 32/63 (50%), Positives = 47/63 (74%)
Frame = +2
Query: 131 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 310
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 311 FFE 319
E
Sbjct: 79 LCE 81
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 49.2 bits (112), Expect = 9e-07
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +2
Query: 134 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 310
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL 97
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 46.0 bits (104), Expect = 8e-06
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 134 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 307
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 308 M 310
+
Sbjct: 85 L 85
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 40.3 bits (90), Expect = 4e-04
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 86 ISRLDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRK 262
+ + + + +MD +RN+++ H+ HGK+T D L+ + A + RFTD
Sbjct: 116 VYKKEYLADLMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILF 175
Query: 263 DEQDRCITIKSTAISM 310
E+ R +IKS +S+
Sbjct: 176 IEKQRGCSIKSQPVSI 191
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 319
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 108
Query: 320 LEEKXLVFITNP 355
++ I P
Sbjct: 109 TAKRHYAHIDCP 120
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 319
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 320 LEEKXLVFITNP 355
++ I P
Sbjct: 110 TAKRHYAHIDCP 121
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 319
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 320 LEEKXLVFITNP 355
++ I P
Sbjct: 110 TAKRHYAHIDCP 121
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITIK 292
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 293 STAISM 310
S +S+
Sbjct: 61 SQPVSI 66
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 34.3 bits (75), Expect = 0.027
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITI 289
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 34.3 bits (75), Expect = 0.027
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITI 289
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 32.7 bits (71), Expect = 0.083
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 134 IRNMSVIAHVDHGKSTLTDSLVSKAGII 217
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.083
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.083
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.083
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.083
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.083
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.19
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 119 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 244
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 29.5 bits (63), Expect = 0.77
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 171 ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSL 308
AS+ + + F R V+ ++EPE+P++ R+ + PL RPS+
Sbjct: 271 ASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDETEVPLTQRPSI 314
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 167 DRRGRSQTCCGYSASCPSSHG 105
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 348 VMNTKXFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 172
V N K +S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 171 P 169
P
Sbjct: 102 P 102
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 167 DRRGRSQTCCGYSASCPSSHG 105
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 348 VMNTKXFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 172
V N K +S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 171 P 169
P
Sbjct: 102 P 102
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 28.7 bits (61), Expect = 1.3
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Frame = +2
Query: 128 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AGARAGETRFT-----DTRK 262
+++ N+ V+ HVD GKSTL L+ ++ AR G+ F D +
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 227
Query: 263 DEQDRCITIKSTAISMFFELEEKXLVFITNP 355
+E++R +T+ S FE + +V + P
Sbjct: 228 EERERGVTMDIGRTS--FETSHRRIVLLDAP 256
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 28.7 bits (61), Expect = 1.3
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Frame = +2
Query: 128 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AGARAGETRFT-----DTRK 262
+++ N+ V+ HVD GKSTL L+ ++ AR G+ F D +
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 245
Query: 263 DEQDRCITIKSTAISMFFELEEKXLVFITNP 355
+E++R +T+ S FE + +V + P
Sbjct: 246 EERERGVTMDIGRTS--FETSHRRIVLLDAP 274
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 274
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 274
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGII 217
NM + HVD GKST+ L+ G++
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMV 136
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 182 GLTCRDRRGRSQTCCGYSASCPSSH 108
G RD G Q+C CPSSH
Sbjct: 607 GSPLRDSNGALQSCSERDGGCPSSH 631
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
F26A3.8 protein.
Length = 1601
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 180 PSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLC 311
P T+W PV+ V PE P + SP+ + P LC
Sbjct: 1046 PLETKWRADPVTFEVIPPENPERIPDFHMGNE-RSPMYVSPRLC 1088
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 180 PSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLC 311
P T+W PV+ V PE P + SP+ + P LC
Sbjct: 1046 PLETKWRADPVTFEVIPPENPERIPDFHMGNE-RSPMYVSPRLC 1088
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 188 P*GLTCRDRRGRSQ-TCCGYSASCPSSHGSRLAV 90
P G C+ + Q CCG S CP+ + +A+
Sbjct: 1162 PTGFFCQFSAKKGQFQCCGQSGGCPTGRAAFIAI 1195
>Z78410-8|CAB01642.1| 556|Caenorhabditis elegans Hypothetical
protein C51E3.7b protein.
Length = 556
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 64 HKPSKMVNFTARRDPWDDGQEAEYPQHVCDR 156
H+PSK+ ++A P DDG+ + P++ R
Sbjct: 168 HEPSKIHIYSASWGPTDDGKTVDGPRNATMR 198
>Z78410-7|CAB01635.1| 652|Caenorhabditis elegans Hypothetical
protein C51E3.7a protein.
Length = 652
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 64 HKPSKMVNFTARRDPWDDGQEAEYPQHVCDR 156
H+PSK+ ++A P DDG+ + P++ R
Sbjct: 264 HEPSKIHIYSASWGPTDDGKTVDGPRNATMR 294
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 146 SVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 262
+++ D GK+TL ++L S AG G A +F TR+
Sbjct: 51 AIVGVADSGKTTLLEALTSGAGGDIGGIAMLDKFMLTRR 89
>U04995-1|AAA56868.1| 652|Caenorhabditis elegans prohormone
convertase 2 protein.
Length = 652
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 64 HKPSKMVNFTARRDPWDDGQEAEYPQHVCDR 156
H+PSK+ ++A P DDG+ + P++ R
Sbjct: 264 HEPSKIHIYSASWGPTDDGKTVDGPRNATMR 294
>Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical
protein F47G4.6 protein.
Length = 128
Score = 25.8 bits (54), Expect = 9.5
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Frame = +2
Query: 8 FKXVRHCLAYGSWFNRTKIINHLKW*ISRLDEIRGMMDKKRNIRNMSVIAHVDHGKSTLT 187
F+ R Y W++ I+ L S +I+ M KK+ IR+ S A + +L
Sbjct: 8 FQCYRIPNVYVQWYDLEPTIHWLTGGNSNSRQIQEMDQKKKKIRSTSAYALFFRERQSLE 67
Query: 188 DSLVSKA--GIIAG--ARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKXLV 340
A G I+ AR ++ + +K + RC + T+I+ E + + L+
Sbjct: 68 KRAAPYATFGQISQKIARQWDSLTEEEKKAYKQRCEKNRKTSIANAVEEKARQLL 122
>Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical
protein T05F1.7 protein.
Length = 484
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 358 SGVCDEY*XFLFKLEEHRDGRRFNGDATV 272
SG+ DE+ L L+E +GR GD +
Sbjct: 202 SGISDEFQKLLISLKEDSEGRGKTGDRRI 230
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 161 RGRSQTCCGYSASCPSSH 108
+GR T CG SCP H
Sbjct: 1012 KGRGATLCGQCPSCPEIH 1029
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 161 RGRSQTCCGYSASCPSSH 108
+GR T CG SCP H
Sbjct: 1012 KGRGATLCGQCPSCPEIH 1029
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,248,621
Number of Sequences: 27780
Number of extensions: 160816
Number of successful extensions: 495
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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