Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_N14
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    33   0.001
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    33   0.001
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.013
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.092
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   2.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.4  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.001
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.001
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.013
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 143 MSVIAHVDHGKSTLTDSL 196
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.092
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 86  ISRLDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSL 196
           +S+L  +   +  ++   N+  I HV HGKST+  ++
Sbjct: 26  VSKLTALSREVISRQATINIGTIGHVAHGKSTIVKAI 62


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 79  MVNFTARRDPWDDGQEAEYP 138
           +VN+ +R D   D  E +YP
Sbjct: 324 LVNYASRSDMHSDNIEKKYP 343


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 79  MVNFTARRDPWDDGQEAEYP 138
           +VN+ +R D   D  E +YP
Sbjct: 324 LVNYASRSDMHSDNIEKKYP 343


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 278 CITIKSTAISMFF 316
           C T+K +A+ M+F
Sbjct: 688 CATVKGSAVDMYF 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,925
Number of Sequences: 438
Number of extensions: 2171
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)