Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_N13
(398 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal pr... 78 2e-15
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 31 0.40
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 2.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 2.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 2.8
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 27 3.7
Z83129-7|CAB05644.1| 256|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical pr... 26 8.7
AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical ... 26 8.7
AL021508-1|CAA16431.1| 170|Caenorhabditis elegans Hypothetical ... 26 8.7
>AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 28 protein.
Length = 65
Score = 78.2 bits (184), Expect = 2e-15
Identities = 40/54 (74%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
Frame = +1
Query: 70 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIXNVKGPVRDGDILT 228
MDK LARV KV+GRTGSQGQCTQV+VEFI + +R II NVKGPVR+GDILT
Sbjct: 1 MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 30.7 bits (66), Expect = 0.40
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 9 ETRQLWCTCAYCIKLDITSQNG*TQRSCSCRES 107
ETRQ C CA ++ + Q Q SCSC+ S
Sbjct: 22 ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++E+ WVYP
Sbjct: 8246 EPTGPEDQ---KLSKNEKGEWVYP 8266
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++E+ WVYP
Sbjct: 9290 EPTGPEDQ---KLSKNEKGEWVYP 9310
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++++ WVYP
Sbjct: 6753 EPTGPEDQ---KLSKNKKGEWVYP 6773
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++++ WVYP
Sbjct: 7472 EPTGPEDQ---KLSKNKKGEWVYP 7492
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++++ WVYP
Sbjct: 10009 EPTGPEDQ---KLSKNKKGEWVYP 10029
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++++ WVYP
Sbjct: 6798 EPTGPEDQ---KLSKNKKGEWVYP 6818
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++++ WVYP
Sbjct: 7517 EPTGPEDQ---KLSKNKKGEWVYP 7537
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++++ WVYP
Sbjct: 10054 EPTGPEDQ---KLSKNKKGEWVYP 10074
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++++ WVYP
Sbjct: 6798 EPTGPEDQ---KLSKNKKGEWVYP 6818
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++++ WVYP
Sbjct: 7517 EPTGPEDQ---KLSKNKKGEWVYP 7537
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 142 EYTGPENQYGQALSRHEQERWVYP 71
E TGPE+Q LS++++ WVYP
Sbjct: 10054 EPTGPEDQ---KLSKNKKGEWVYP 10074
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 170 PAVRSSXT*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 295
P S +DP E+S + NLNVK+ + L H IR+
Sbjct: 64 PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105
>Z83129-7|CAB05644.1| 256|Caenorhabditis elegans Hypothetical
protein W06G6.12 protein.
Length = 256
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 24 WCTCAYCIKLDITSQNG*TQRSCSCRESA 110
W CAY + ++SQ T +C+CR A
Sbjct: 120 WECCAYWVSKRMSSQEHHTCPNCNCRVKA 148
>Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 221 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 298
++ FLNL +K CD LL+ ++C ++R
Sbjct: 74 TNFFLNLMIKPSPCDLLLKTYFCSKIR 100
>AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 221 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 298
++ FLNL +K CD LL+ ++C ++R
Sbjct: 74 TNFFLNLMIKPSPCDLLLKTYFCSKIR 100
>AL021508-1|CAA16431.1| 170|Caenorhabditis elegans Hypothetical
protein Y70C5B.1 protein.
Length = 170
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 24 WCTCAYCIKLDITSQNG*TQRSCSCRESA 110
W CAY + ++SQ T +C+CR A
Sbjct: 34 WECCAYWVSKRMSSQEHHTCPNCNCRVKA 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,531,147
Number of Sequences: 27780
Number of extensions: 149039
Number of successful extensions: 366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -