Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_N08
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    73   2e-14
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    73   3e-14
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   1.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   5.0  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   6.6  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 72.9 bits (171), Expect = 2e-14
 Identities = 36/75 (48%), Positives = 39/75 (52%)
 Frame = +1

Query: 34  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 213
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 214 FHFRKNKNFCPVFEL 258
           FH  KN  + P   L
Sbjct: 61  FHLMKNPLWRPTVNL 75



 Score = 48.0 bits (109), Expect = 6e-07
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +2

Query: 251 LNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKAXXXXXXXXXXXPKQPVIVKAKFXSK 427
           +NLD+LWTLV  +TR KY        PVIN++++           P  PVI++ ++ S+
Sbjct: 73  VNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSR 131


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 36/75 (48%), Positives = 39/75 (52%)
 Frame = +1

Query: 34  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 213
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 214 FHFRKNKNFCPVFEL 258
           FH  KN  + P   L
Sbjct: 61  FHLMKNPLWRPTVNL 75



 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = +2

Query: 251 LNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKAXXXXXXXXXXXPKQPVIVKAKFXSK 427
           +NLD+LWTL+  + R KY        PVIN++++           P+ PVIV+ ++ S+
Sbjct: 73  VNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPVIVQTRYVSR 131


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 215 STLERTRISVQFLNLDKLWTLVSEQTRLKYASAPXGXVP 331
           ST ER  ++  + NL K W  +S     K++  P G +P
Sbjct: 311 STGERV-LTTDYNNLKKQWASISPNITYKHSYNPNGTIP 348


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 300 FSLVCSETNVQSLSKFKNWTEILVL 226
           F  VC+ T+  SL+ + NW   L L
Sbjct: 619 FYFVCNATSYSSLNPYGNWARPLFL 643


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = -2

Query: 426 FEXNFAFTMTGCLGSLPLPSNL*YPALTILMTGTLPXGADAYFSLVCSETNVQSLSKFKN 247
           F    + T+ G      LP N     L +  +  LP   + YF    S+T   SL+    
Sbjct: 20  FFLQLSLTLIGLSWIFILPRNEIIDRLHVSESALLPGQVNTYFENRYSKTVSSSLTAANT 79

Query: 246 WTEI 235
           W+ +
Sbjct: 80  WSHL 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,326
Number of Sequences: 5004
Number of extensions: 30987
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)