Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_N08
(430 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 93 4e-19
BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 93 4e-19
AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 93 4e-19
AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 93 4e-19
BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 92 6e-19
BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 90 3e-18
AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a ... 46 4e-05
AY358091-1|AAQ88458.1| 126|Homo sapiens VFLL3057 protein. 29 5.1
>U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 93.1 bits (221), Expect = 4e-19
Identities = 39/75 (52%), Positives = 49/75 (65%)
Frame = +1
Query: 34 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 213
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 214 FHFRKNKNFCPVFEL 258
+H ++N++FCP L
Sbjct: 61 YHLKRNQSFCPTVNL 75
Score = 67.7 bits (158), Expect = 2e-11
Identities = 33/69 (47%), Positives = 43/69 (62%)
Frame = +2
Query: 221 LERTRISVQFLNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKAXXXXXXXXXXXPKQPV 400
L+R + +NLDKLWTLVSEQTR+ A G P+I++V++ PKQPV
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 122
Query: 401 IVKAKFXSK 427
IVKAKF S+
Sbjct: 123 IVKAKFFSR 131
>BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 93.1 bits (221), Expect = 4e-19
Identities = 39/75 (52%), Positives = 49/75 (65%)
Frame = +1
Query: 34 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 213
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 214 FHFRKNKNFCPVFEL 258
+H ++N++FCP L
Sbjct: 61 YHLKRNQSFCPTVNL 75
Score = 67.7 bits (158), Expect = 2e-11
Identities = 33/69 (47%), Positives = 43/69 (62%)
Frame = +2
Query: 221 LERTRISVQFLNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKAXXXXXXXXXXXPKQPV 400
L+R + +NLDKLWTLVSEQTR+ A G P+I++V++ PKQPV
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 122
Query: 401 IVKAKFXSK 427
IVKAKF S+
Sbjct: 123 IVKAKFFSR 131
>AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a
protein.
Length = 106
Score = 93.1 bits (221), Expect = 4e-19
Identities = 39/75 (52%), Positives = 49/75 (65%)
Frame = +1
Query: 34 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 213
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 214 FHFRKNKNFCPVFEL 258
+H ++N++FCP L
Sbjct: 61 YHLKRNQSFCPTVNL 75
Score = 47.6 bits (108), Expect = 2e-05
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +2
Query: 221 LERTRISVQFLNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKA 352
L+R + +NLDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106
>AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A
protein.
Length = 148
Score = 93.1 bits (221), Expect = 4e-19
Identities = 39/75 (52%), Positives = 49/75 (65%)
Frame = +1
Query: 34 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 213
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 214 FHFRKNKNFCPVFEL 258
+H ++N++FCP L
Sbjct: 61 YHLKRNQSFCPTVNL 75
Score = 67.7 bits (158), Expect = 2e-11
Identities = 33/69 (47%), Positives = 43/69 (62%)
Frame = +2
Query: 221 LERTRISVQFLNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKAXXXXXXXXXXXPKQPV 400
L+R + +NLDKLWTLVSEQTR+ A G P+I++V++ PKQPV
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 122
Query: 401 IVKAKFXSK 427
IVKAKF S+
Sbjct: 123 IVKAKFFSR 131
>BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for
IMAGE:3543815) protein.
Length = 147
Score = 92.3 bits (219), Expect = 6e-19
Identities = 38/70 (54%), Positives = 47/70 (67%)
Frame = +1
Query: 49 KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 228
+KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM+++H ++
Sbjct: 5 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64
Query: 229 NKNFCPVFEL 258
N++FCP L
Sbjct: 65 NQSFCPTVNL 74
Score = 67.7 bits (158), Expect = 2e-11
Identities = 33/69 (47%), Positives = 43/69 (62%)
Frame = +2
Query: 221 LERTRISVQFLNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKAXXXXXXXXXXXPKQPV 400
L+R + +NLDKLWTLVSEQTR+ A G P+I++V++ PKQPV
Sbjct: 62 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 121
Query: 401 IVKAKFXSK 427
IVKAKF S+
Sbjct: 122 IVKAKFFSR 130
>BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 90.2 bits (214), Expect = 3e-18
Identities = 38/75 (50%), Positives = 49/75 (65%)
Frame = +1
Query: 34 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 213
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 214 FHFRKNKNFCPVFEL 258
++ ++N++FCP L
Sbjct: 61 YNLKRNQSFCPTVNL 75
Score = 62.1 bits (144), Expect = 8e-10
Identities = 31/69 (44%), Positives = 41/69 (59%)
Frame = +2
Query: 221 LERTRISVQFLNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKAXXXXXXXXXXXPKQPV 400
L+R + +NLDKLWTLVSEQTR+ A G P+I++V++ KQPV
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQPV 122
Query: 401 IVKAKFXSK 427
IVKAK S+
Sbjct: 123 IVKAKLFSR 131
>AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a
protein.
Length = 34
Score = 46.4 bits (105), Expect = 4e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 251 LNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKA 352
+NLDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 1 VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34
>AY358091-1|AAQ88458.1| 126|Homo sapiens VFLL3057 protein.
Length = 126
Score = 29.5 bits (63), Expect = 5.1
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 203 PSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP---*LT*PLSFLVF 51
P+LPK+PG ++ L W S P P G + + PCP PL FLV+
Sbjct: 55 PALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCPFRVQFEPPLQFLVW 104
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,301,234
Number of Sequences: 237096
Number of extensions: 1205123
Number of successful extensions: 2363
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2356
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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