Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_N08
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    95   1e-20
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    39   0.002
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    28   2.5  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    28   2.5  
U80448-10|AAB37823.1|  482|Caenorhabditis elegans Hypothetical p...    27   5.7  
U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation r...    27   7.5  
U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation r...    27   7.5  
AF082011-1|AAD03023.1|  467|Caenorhabditis elegans UDP-N-acetylg...    27   7.5  
Z82285-9|CAB05303.1|  513|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z82264-13|CAB05168.1|  513|Caenorhabditis elegans Hypothetical p...    26   10.0 
Z81527-5|CAB04273.2|  350|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    26   10.0 
AL132952-25|CAB63388.1|  513|Caenorhabditis elegans Hypothetical...    26   10.0 
AL132846-9|CAB63368.1|  513|Caenorhabditis elegans Hypothetical ...    26   10.0 

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 95.5 bits (227), Expect = 1e-20
 Identities = 41/71 (57%), Positives = 48/71 (67%)
 Frame = +1

Query: 34  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 213
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 214 FHFRKNKNFCP 246
           FH  KN+++CP
Sbjct: 61  FHLNKNQHYCP 71



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +2

Query: 251 LNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKAXXXXXXXXXXXPKQPVIVKAKFXS 424
           +N+++LW+LV ++ R K   A  G  PVI+  K            P+ P+IVKA+F S
Sbjct: 73  VNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFS 127


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +2

Query: 251 LNLDKLWTLVSEQTRLKYASAPXGXVPVINIVKAXXXXXXXXXXXPKQPVIVKAKFXS 424
           +N+++LW+LV ++ R K   A  G  PVI+  K            P+ P+IVKA+F S
Sbjct: 16  VNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFS 70


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 140 PALPRPPGCLRCFPIRPCP 84
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
 Frame = +1

Query: 37  ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMD-----KYHPGYFGKL 201
           +T  KK+ K  GH                   N GG   H + M+     ++ P  F KL
Sbjct: 127 STKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKKL 186

Query: 202 GMRNFHFRK 228
           G   F+F+K
Sbjct: 187 GKSFFNFKK 195


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 273 VQSLSKFKNWTEILVLSKVEISHTKFAKVSR 181
           + +L    NWT  L LSKV   H  F  ++R
Sbjct: 14  ISTLGVIANWTVFLFLSKVPSIHKSFGSLTR 44


>U80448-10|AAB37823.1|  482|Caenorhabditis elegans Hypothetical
           protein F59A3.9 protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 357 YPALTILMTGTLPXGADAYFSLVCSETNVQSLSKFKNWTEILVLSK-VEISHTKFAK 190
           YP  T  +TG+ P G D + S +     V +L     + +++ L K +   +T F+K
Sbjct: 97  YPDSTCFITGSYPAGVDIFSSDIDFTVKVPTLEGANPFLKLMQLRKELSCYYTIFSK 153


>U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation
           related protein 12,isoform a protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 136 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 38
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation
           related protein 12,isoform b protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 136 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 38
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>AF082011-1|AAD03023.1|  467|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 136 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 38
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>Z82285-9|CAB05303.1|  513|Caenorhabditis elegans Hypothetical
           protein T28F3.9 protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 273 VQSLSKFKNWTEILVLSKVEISHTKFAKVSRM 178
           +QSL +F+NWT +L+L   ++      +++R+
Sbjct: 247 MQSLLQFENWTYLLLLQNHDVISKSVYELARI 278


>Z82264-13|CAB05168.1|  513|Caenorhabditis elegans Hypothetical
           protein T28F3.9 protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 273 VQSLSKFKNWTEILVLSKVEISHTKFAKVSRM 178
           +QSL +F+NWT +L+L   ++      +++R+
Sbjct: 247 MQSLLQFENWTYLLLLQNHDVISKSVYELARI 278


>Z81527-5|CAB04273.2|  350|Caenorhabditis elegans Hypothetical
           protein F35E12.6 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
 Frame = -2

Query: 312 ADAYFSLV---CSETNVQSL---SKFKNWTEILVLSKVEISHTKFAKVS 184
           ADAYF+++   CS  N+++L   SK+KN    L ++++  +    AK++
Sbjct: 265 ADAYFTVICDGCSSINIKTLIFDSKYKNGAGYLEVAEMSPTQKLPAKLN 313


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = +1

Query: 139 GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFC 243
           G E HH    D YHP  F      +L + N + F KNK +C
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYC 325


>AL132952-25|CAB63388.1|  513|Caenorhabditis elegans Hypothetical
           protein Y51H4A.25a protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 273 VQSLSKFKNWTEILVLSKVEISHTKFAKVSRM 178
           +QSL +F+NWT +L+L   ++      +++R+
Sbjct: 247 MQSLLQFENWTYLLLLQNHDVISKSVYELARI 278


>AL132846-9|CAB63368.1|  513|Caenorhabditis elegans Hypothetical
           protein Y51H4A.25a protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 273 VQSLSKFKNWTEILVLSKVEISHTKFAKVSRM 178
           +QSL +F+NWT +L+L   ++      +++R+
Sbjct: 247 MQSLLQFENWTYLLLLQNHDVISKSVYELARI 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,340,448
Number of Sequences: 27780
Number of extensions: 182710
Number of successful extensions: 449
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)