Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_N01
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   3.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   3.8  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   3.8  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   3.8  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    24   5.1  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    24   6.7  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    23   8.8  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    23   8.8  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 202 IYFWKLYSHP 173
           IYFWK+YS P
Sbjct: 397 IYFWKIYSAP 406


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 76  QGSNGGANIKPVARPSIHYHKGYCP 150
           + S   +++   ++P +H  +GYCP
Sbjct: 288 ESSPSRSSVLSTSKPEVHETEGYCP 312


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 117 SSYRFNIGPPITSLLYI 67
           +SY  N+G PIT L Y+
Sbjct: 163 NSYSHNLGEPITGLTYL 179


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 244 QDELDNTISKHAHPIXVPRK 303
           +DEL+N I+K  H + VP +
Sbjct: 217 EDELENKITKGEHSLLVPEE 236


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 203 DILLETLFPSIVNSRQ 156
           DI+ E+L PSI+ SRQ
Sbjct: 206 DIIRESLIPSIMESRQ 221


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 148 PFACREFTMDGNRV--SRSISPXGE 216
           PFA ++F  D NRV     I P GE
Sbjct: 279 PFANQDFNPDANRVFQDAGIKPQGE 303


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 91  GANIKPVARPSIHYHKGYCPFACREF---TMDGNRVSRSISP 207
           G N+  +  P + +++ +  F CRE    T   + VS  +SP
Sbjct: 116 GCNLSELKDPDLTHYRNFQDFFCRELRPETRPVDPVSPVVSP 157


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 40  YXCFLNLMSNIEQGS 84
           Y C +NLM N+E+ S
Sbjct: 733 YLCSINLMENVEEES 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,378
Number of Sequences: 5004
Number of extensions: 22412
Number of successful extensions: 41
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)