Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_N01
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0237 + 21788886-21789965                                         27   2.6  
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    27   3.5  
09_02_0571 + 10793000-10793782                                         26   6.1  
01_05_0605 + 23603544-23604329                                         26   6.1  

>09_06_0237 + 21788886-21789965
          Length = 359

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 115 RPSIHYHKGYCPFACREFTMDGNRVSRSISPXG 213
           RP  H+ +GY  +    FT+ G ++   +SP G
Sbjct: 53  RPVAHFPRGYYHYVFHSFTVSGKQI-LGVSPFG 84


>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 163 EFTMDGNRVSRSISPXGENXANAXGYGQDELDNTISKHAHP 285
           E+T+ G+ V+R ISP   N A   G GQD L   +++H  P
Sbjct: 115 EYTIGGSAVARGISP---NLALFFG-GQDSLPWFLARHELP 151


>09_02_0571 + 10793000-10793782
          Length = 260

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 192 GNSIPIHCEFPTSKWAIAFVIMNTWSSYRFNIGP 91
           GN   IH +   + WA+  V+M     YR   GP
Sbjct: 142 GNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 175


>01_05_0605 + 23603544-23604329
          Length = 261

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 192 GNSIPIHCEFPTSKWAIAFVIMNTWSSYRFNIGP 91
           GN   IH +   + WA+  V+M     YR   GP
Sbjct: 143 GNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,951,000
Number of Sequences: 37544
Number of extensions: 140861
Number of successful extensions: 265
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)