Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_N01
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70844-2|AAB09094.2|  203|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U70844-2|AAB09094.2|  203|Caenorhabditis elegans Hypothetical
           protein ZK154.4 protein.
          Length = 203

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 139 GYCPFACREFTMDGNRVSRSISPX-GENXANAXGYGQDELDNTISKH 276
           G+   A ++   D N  +   +P  G+   +  G+G D+LD+T+ +H
Sbjct: 127 GFRDTAPKKSRFDFNEANVGATPTLGDIDDDLLGWGDDDLDSTLKEH 173


>U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical
           protein ZC395.8 protein.
          Length = 687

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
 Frame = +1

Query: 145 CPFACREFTMDGNRVSRSIS----PXGENXANAXGYGQDELDNTISKHAH 282
           CP  C     +G    +         GE+  +   Y Q EL+   SKH H
Sbjct: 6   CPLCCETLKEEGAHFYKHFKYKRYACGESTCDMGFYTQQELNAHCSKHGH 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,760,015
Number of Sequences: 27780
Number of extensions: 123512
Number of successful extensions: 230
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)