Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_M24
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0623 - 23768426-23768794                                         27   4.6  
11_06_0204 + 21191611-21192807                                         27   6.1  
08_02_1561 + 27880694-27881596                                         26   8.1  

>01_05_0623 - 23768426-23768794
          Length = 122

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 203 TGPQESDPMYEVMIGGWGNAKSVIRKNRTKP 295
           T  + S P +   + GWGN  S + + RT P
Sbjct: 38  TSTKRSSPAWGGELVGWGNMSSPVWERRTSP 68


>11_06_0204 + 21191611-21192807
          Length = 398

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 218 SDPMYEVMIGGWGNAKSVIRKNRTKPDKVXIESPGILNG 334
           S  +Y    G WG+A ++ R++    D V +  PG+  G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233


>08_02_1561 + 27880694-27881596
          Length = 300

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 295 GLGSIFPDDALSVSPASNHHLIHRIRFLRA 206
           GL   F DDALS S    HH++H+ R  R+
Sbjct: 67  GLAVAF-DDALSPSSRCAHHVLHKKRGSRS 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,258,522
Number of Sequences: 37544
Number of extensions: 134780
Number of successful extensions: 271
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)