Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_M22
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 180 2e-46
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 145 3e-36
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 69 6e-13
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 59 4e-10
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 44 1e-05
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 40 2e-04
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 35 0.008
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 34 0.015
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 31 0.14
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 31 0.14
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 28 0.96
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce... 27 1.7
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 27 2.2
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 2.2
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 2.9
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 3.9
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 5.1
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 25 6.8
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 25 6.8
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 6.8
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 6.8
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 25 9.0
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 9.0
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 25 9.0
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 9.0
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 9.0
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 9.0
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 180 bits (437), Expect = 2e-46
Identities = 81/126 (64%), Positives = 100/126 (79%), Gaps = 1/126 (0%)
Frame = +3
Query: 99 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAA-AENFPFCTIDPNESRVPVPDERYDYLC 275
GR G NLK GIVG+PNVGKSTFF +TKS N+P+ TIDP E++V VPDER+D+LC
Sbjct: 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLC 74
Query: 276 EYHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHV 455
E +KP S+VPAFL V DIAGL +GA+ G GLGNAFLSH++A DAI+ + RAFDD ++IHV
Sbjct: 75 EAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHV 134
Query: 456 DGDVXP 473
+GDV P
Sbjct: 135 EGDVDP 140
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 145 bits (352), Expect = 3e-36
Identities = 65/131 (49%), Positives = 94/131 (71%), Gaps = 1/131 (0%)
Frame = +3
Query: 96 IGRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAA-AENFPFCTIDPNESRVPVPDERYDYL 272
+GR G +LK+GIVG+PN+GKST F +LTK+ N+PF TIDP ++ PV D +Y+ L
Sbjct: 39 LGRPGNHLKIGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELL 98
Query: 273 CEYHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIH 452
CE ++P +++PA L + D AGL R +++G+GLGNAFLS+I++ DA+F L RAF + V H
Sbjct: 99 CEIYQPKTRIPAQLTIYDTAGLTRNSSKGEGLGNAFLSNIRSVDALFQLVRAFPEAQVPH 158
Query: 453 VDGDVXPGKRL 485
V+ V P + L
Sbjct: 159 VEKSVDPVRDL 169
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 472 PVRDLETIAEQLRLKD 519
PVRDL+ I E+L LKD
Sbjct: 165 PVRDLQIIQEELLLKD 180
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 68.5 bits (160), Expect = 6e-13
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Frame = +3
Query: 105 VGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNE-----------SRVPVP 251
+G ++ +G VG P+ GKST N LT + A NFPF TI+PN SR +
Sbjct: 1 MGRDILIGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQ 60
Query: 252 DERYDYLCEYHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNL 419
D+ +P + ++D+AGL+ GA G+GLGN FL ++ DA+ ++
Sbjct: 61 DKCKPIYGGCKNGVRSIP--IQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHV 114
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 58.8 bits (136), Expect = 4e-10
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Frame = +3
Query: 111 TNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDP--NESRVPVPDERYDYLCEYH 284
T ++G+VG+PN GKST N LT S++ + F TI P + +PD+ + +Y
Sbjct: 235 TICEIGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSF--QY- 291
Query: 285 KPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIK 395
+ DI G+++GA++G+GLG FL H++
Sbjct: 292 ----------RLADIPGIIKGASDGKGLGYDFLRHVE 318
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 44.4 bits (100), Expect = 1e-05
Identities = 30/106 (28%), Positives = 53/106 (50%)
Frame = +3
Query: 96 IGRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYDYLC 275
+ R G VG +G P+VGKST LT +++ A + F T+ VP +
Sbjct: 58 VARTGIGT-VGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTL------TTVPG-----VL 105
Query: 276 EYHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIF 413
+Y+ A + ++D+ G++ GA +G+G G ++ + C+ IF
Sbjct: 106 QYN------GAKIQILDLPGIIEGAKDGRGRGKQVITVARTCNLIF 145
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 40.3 bits (90), Expect = 2e-04
Identities = 28/97 (28%), Positives = 52/97 (53%)
Frame = +3
Query: 120 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYDYLCEYHKPASK 299
+V +G P+VGKST + +TK+++A ++ F T+ + +P E YD
Sbjct: 64 RVAFIGFPSVGKSTLLSAITKTKSATASYEFTTL----TAIPGVLE-YD----------- 107
Query: 300 VPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAI 410
A + ++D+ G++ GA++G+G G +S + D I
Sbjct: 108 -GAEIQMLDLPGIIEGASQGRG-GRQAVSAARTADLI 142
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 34.7 bits (76), Expect = 0.008
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 102 RVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFP 209
++ ++L VG++G PNVGKS+ N L A + P
Sbjct: 265 KLKSSLTVGVIGYPNVGKSSVINALVNRSANGRSAP 300
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 33.9 bits (74), Expect = 0.015
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 129 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 218
+ G PNVGKS+F N +T++Q + + F T
Sbjct: 173 VCGYPNVGKSSFMNKVTRAQVDVQPYAFTT 202
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 30.7 bits (66), Expect = 0.14
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 117 LKVGIVGVPNVGKSTFFNVLTKSQ 188
+ VG++G PN GKS+ N L K +
Sbjct: 311 ISVGLIGFPNAGKSSIINTLRKKK 334
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 111 TNLKVGIVGVPNVGKSTFFNVLTKSQ 188
T + G+VG PNVGKS+ N L S+
Sbjct: 300 TKMTFGLVGYPNVGKSSTINALVGSK 325
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.9 bits (59), Expect = 0.96
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 120 KVGIVGVPNVGKSTFFNVLTKSQAA----AENFPFCTIDPN 230
KV IVG+ GKST +L K+ + + +P ID N
Sbjct: 1130 KVAIVGISGSGKSTLVELLRKTYPSEDIYIDGYPLTNIDTN 1170
>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 427 ARHKLKIASQALMWDRKAFPNPWPSAAPRTRPAMSTTF 314
+RH L ++ D AFP WPS +ST++
Sbjct: 46 SRHSLGKLMVSMYADSMAFPKNWPSTKENLTLVLSTSY 83
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 114 NLKVGIVGVPNVGKSTFFNVLTKSQAA 194
++K+ IVG NVG +T F +L AA
Sbjct: 20 SIKIVIVGAGNVGSTTAFTLLLSGLAA 46
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 279 YHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNL 419
Y+ K P FL V G V G + N + ++A IFNL
Sbjct: 570 YYTDEEKPPKFLPWVSFIGFVLGIIWISTIANEVVGILRALGVIFNL 616
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 93 LIGRV-GTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCT 218
L RV T+ K+ I G N GKST N L E+ CT
Sbjct: 146 LFSRVEDTSSKILITGDLNAGKSTLCNALVHKDILPEDQQPCT 188
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 93 LIGRVGTNLKVGIVGVPNVGKSTFFNVL 176
LI R L + + G GK+TFFN L
Sbjct: 23 LIKRKECGLTIMLCGASGTGKTTFFNTL 50
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -2
Query: 485 KSLTGXYVTVNMDDVFIIECTTQVKNSITSFDVGQKGVSQSLAFSSAAHE 336
K TG V ++ D+V + T + ++ S D+G+ +Q++ + H+
Sbjct: 535 KDDTGMVVRISKDEVTFLSDTLMTELTVFSRDLGEASSAQAVNSAYELHD 584
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 500 SAMVSKSLTGXYVTVNMDDVFIIECTTQVKNSITSFDVGQKGVSQSLAFSSAAHETGYVH 321
SA+ S +L Y + + +V++++TS +VG+K V+ S F+S GY
Sbjct: 150 SAVASAALVSAYHLYPVAKDIVSRWNNEVQDAVTSHNVGRK-VASSPFFTST---LGYTP 205
Query: 320 N 318
N
Sbjct: 206 N 206
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 6.8
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = -2
Query: 227 RVDGAERKVFSCCLTLGKN 171
R++ + + +F CC+ +G+N
Sbjct: 324 RLEASRKYIFGCCVVIGEN 342
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 175 RTLKNVDFPTLGTPTIPTFKLVPTLPI 95
RTL+N DFP+L P++P+
Sbjct: 439 RTLRNEDFPSLAEVANQNSSSAPSVPV 465
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 RVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENF-PFCTIDPNESRVPVPD 254
R G ++ + +VG ++GK+TF N +S NF P T+D E + + D
Sbjct: 114 RNGIDINLIVVGESSLGKTTFVNSFLQSNDT--NFRPKKTMDFVEHKATLSD 163
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 366 LGNAFLSHIKACDAIFNLCRAFDDEDVIHVDGDVXPGKRLGDH 494
LG + S KA DAI L + F+D D V ++ P DH
Sbjct: 196 LGFSSSSKPKAVDAIVKLYKVFNDCDATQV--EINPLAETTDH 236
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 139 FPMLENLHSSMFLPRVKQQLKTFL--SAPSTLMRVGYLY 249
F +L N H + F + KTFL S P+ ++ YL+
Sbjct: 1229 FELLGNFHLNNFTMTALMEFKTFLESSNPALYLKPQYLF 1267
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -1
Query: 72 QPFLEAFFININSNLVFHTSKIVS 1
QP++ + +++S L+ H+SK +S
Sbjct: 160 QPYIPPLYKSVDSPLIVHSSKFMS 183
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Frame = +3
Query: 93 LIGRVGTNLKVGI--VGVPNVGKSTFFN-----VLTKSQAA-AENFPFCT 218
L+ + N +V + VG+PN GKS+ N L KS++A N+P T
Sbjct: 136 LVDQASANGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVT 185
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = -3
Query: 220 MVQKGKFSAAA*LLVRTLKNVDFPTL 143
+ ++G FSA+ +R++K++D P++
Sbjct: 400 LFRRGDFSASMDWYIRSIKSIDIPSV 425
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 276 EYHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHI 392
+ H P K + + D VRG +GQ FLS I
Sbjct: 685 DQHNPNIKSQRRMTLDDFCRNVRGVNDGQDFDRNFLSEI 723
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,323
Number of Sequences: 5004
Number of extensions: 35467
Number of successful extensions: 143
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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