Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_M21
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   156   1e-39
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   1.0  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   2.3  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   4.1  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   4.1  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   7.2  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    24   9.5  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    24   9.5  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  156 bits (379), Expect = 1e-39
 Identities = 70/116 (60%), Positives = 89/116 (76%)
 Frame = +3

Query: 84  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 263
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 264 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSXPGTIRGDLCIQVGRNIIHGS 431
           V +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGS
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGS 119


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -1

Query: 215 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 42
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF    +L TC +
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTCIV 339


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 169 KPFFSKRSIMVPTRPRCTPSGLT 101
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 358 GLVAPSI*RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 242
           G + P   RP  T+L P  T+ TT   +    RP  K +
Sbjct: 359 GSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +3

Query: 261 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSXP--GTIRGDLCIQVGR--NIIHG 428
           L++     P++  V  GL +++ G ++   T+P       GT+ GD C+++G   NI+H 
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVHL 406

Query: 429 SG 434
            G
Sbjct: 407 RG 408


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 172 LKPFFSKRSIMVPTRPRCTPSGLTIIKVRSRCSAIMKYY 56
           ++P+F K + +    P+      T + V+SRC  +  YY
Sbjct: 161 VRPYFYKHADLKQLCPKWNQYLETCVLVQSRCFYVNSYY 199


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 291 VPMVWEGLNVVKTGRQMLGATNP 359
           +  V EG N +  GRQ+L  T+P
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHP 410


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 164 FLFETFNNGAHKTTLYTIRLNHNKSTLTLFR 72
           + ++T NNG +KT   T    + K+   +F+
Sbjct: 174 YFYDTVNNGVYKTGFATTAEAYEKNVRVVFQ 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,228
Number of Sequences: 5004
Number of extensions: 33506
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)