Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_M20
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 142 2e-35
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 141 4e-35
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 0.98
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 1.7
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 26 2.3
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 3.0
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 3.0
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 3.9
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 5.2
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 5.2
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 5.2
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 24 9.1
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 24 9.1
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 9.1
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 142 bits (344), Expect = 2e-35
Identities = 70/105 (66%), Positives = 78/105 (74%)
Frame = +1
Query: 58 RTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 237
RTKT EKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++
Sbjct: 5 RTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRG 64
Query: 238 QVRGISIKLQEEERERRDNYVPXVSALEHDIIEVDPDTKDMLKML 372
VRGIS KLQEEERER+D YVP VS LE D I VD DTKDMLK L
Sbjct: 65 PVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKAL 109
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 141 bits (341), Expect = 4e-35
Identities = 69/105 (65%), Positives = 78/105 (74%)
Frame = +1
Query: 58 RTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 237
RTKT EKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++
Sbjct: 5 RTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRG 64
Query: 238 QVRGISIKLQEEERERRDNYVPXVSALEHDIIEVDPDTKDMLKML 372
VRGIS KLQEEERER+D YVP VS LE D + VD DTKDMLK L
Sbjct: 65 PVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSL 109
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 0.98
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -2
Query: 182 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 72
RG+V + AIS+ ++ F+ S++++ + + FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 363 QHILGVGVYFDDVMFESRHXWDIVVTPLTLLFLKFDRD 250
Q L VG+ DD+ +R+ ++ TP++ L DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 235 SQVRGISIKLQEEERERR 288
S V ISIK QEEER+R+
Sbjct: 351 SHVDSISIKAQEEERKRQ 368
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 3.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 220 RRLRHSQVRGISIKLQEEERERRDNYV 300
R+ S+ R S KL EEER+RR +V
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFV 244
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 200 PAILFLRGLVGMIAISSHILLFVSK 126
P I LRGLV A H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 3.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 57 GHDPWLKLYSAAFDK 13
G D WLKL+ +AF K
Sbjct: 146 GDDTWLKLFPSAFSK 160
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 5.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 154 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 246
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 5.2
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 181 LRNKIAGF----ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPXVSALEHDIIEV 339
+R +IA F A H ++R S+ ++ + E +R Y+P +S + +EV
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 5.2
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +1
Query: 259 KLQEEERERRDNYVPXVSALEHDIIEVD 342
+ + +E+ RRD + L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 54 HDPWLKLYSAAFDKNQ 7
H PWLK+ + F KNQ
Sbjct: 841 HIPWLKMPNFDFKKNQ 856
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 169 PTKPLRNKIAGFATHLMRRLRHS 237
P + +RNK A H+M RL ++
Sbjct: 43 PHESVRNKTISIANHIMTRLNNN 65
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 241 VRGISIKLQEEERERRDNYV 300
+ G+S+KLQE+E +R + V
Sbjct: 365 IGGLSLKLQEQELRKRPDIV 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,670
Number of Sequences: 5004
Number of extensions: 24997
Number of successful extensions: 73
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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