Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_M20
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   138   2e-33
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    30   0.63 
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   1.9  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   1.9  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   2.5  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    28   2.5  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  138 bits (333), Expect = 2e-33
 Identities = 67/106 (63%), Positives = 79/106 (74%), Gaps = 3/106 (2%)
 Frame = +1

Query: 58  RTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 237
           RTKTV        EKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+   
Sbjct: 5   RTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERG 64

Query: 238 QVRGISIKLQEEERERRDNYVPXVSALEHD---IIEVDPDTKDMLK 366
            VRGISIKLQEEERERRDNY+P +S ++      I+VD DT DMLK
Sbjct: 65  PVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLK 110


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 176 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSXKCL 313
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  +  C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 172 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 288
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 172 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 288
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 198 WICHTFNEASQTLASARNLYQTSGRGA 278
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 194 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSXKCLLSNMTSS 334
           +L L H+      TRKCEE L +F ++ ++    ++ K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 214 LMRRLRHSQVRGISIKLQEEERERRDNYVPXVSALE 321
           ++ R  +SQ+  +SI L+ E +ER+D+Y   + ALE
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALE 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,718,850
Number of Sequences: 27780
Number of extensions: 134931
Number of successful extensions: 334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)