Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_M19
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   100   8e-23
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    98   4e-22
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   0.86 
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   4.6  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  100 bits (240), Expect = 8e-23
 Identities = 53/101 (52%), Positives = 70/101 (69%)
 Frame = +1

Query: 106 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYXPHSAGRYA 285
           A S++ + +SL +      IKLF ++    V+V D+SL DYI++     +  PH+AGR+ 
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56

Query: 286 HKRXRKAQCPIXERLTNSLMMHGXNNGKKLMAVRIVKHAFE 408
            KR RKA+C I ERLTNSLMM+G NNGKKL+A RIVKHAFE
Sbjct: 57  TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFE 97


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 98.3 bits (234), Expect = 4e-22
 Identities = 53/97 (54%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
 Frame = +1

Query: 127 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYXPHSAGRYAHKRX 297
           T SL     + E   IKLF ++    V+V D+SL DYI++     +  PH+AGR+  KR 
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60

Query: 298 RKAQCPIXERLTNSLMMHGXNNGKKLMAVRIVKHAFE 408
           RKA+C I ERLTNSLMM+G NNGKKL+A RIVKHAFE
Sbjct: 61  RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFE 97


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 142 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYXPHSAGRYA 285
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  P    R A
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 131 CLYHKPPTFLKSSFS 175
           C  H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,694
Number of Sequences: 5004
Number of extensions: 26955
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)