Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_M17
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 55 1e-08
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.44
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 29 0.77
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 27 2.4
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 2.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 2.4
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 3.1
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c... 26 4.1
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 7.2
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 9.5
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 9.5
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 54.8 bits (126), Expect = 1e-08
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 5/172 (2%)
Frame = +3
Query: 147 KPNSTITVGR-DSINLNGIEGCQYFSTFKMISKSNKKAREYTVELTDEVVNLKDEIEIKL 323
KPN+TI +G+ S + + G + TF++ KK R V T EV +++E +
Sbjct: 29 KPNNTIHLGKFGSFLADDLFGKHFDETFEIYQP--KKIR---VLKTREVQYIEEEKKTNQ 83
Query: 324 SGSDNRNIVDDGLSQKLTAAEIEDLKNDAN----RASDIIESLITNSNTFHNKTEFSQXX 491
+D R +Q +T EI++L+ + RA + I+ L +S TF KT F+Q
Sbjct: 84 ELNDCRG------NQLMTQEEIDELRANIKAGGLRAEEAIKQLTNSSKTFEQKTLFAQEK 137
Query: 492 XXXXXXXXXXXXXQILKPNLRTIAEIMFKLEPGKVQNLRIDTLSQIITTVNI 647
Q+L+P + +A M + +P K+ +L + +S ++T N+
Sbjct: 138 YVTRKGEKYLQRFQVLRPCVEVVANYMIEHDPYKILDLTAECISLMLTLGNV 189
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.5 bits (63), Expect = 0.44
Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 3/137 (2%)
Frame = +3
Query: 57 KVSKMSDNMIKIGDYIV--IQKQNFKKLHKYNKPNSTITVGRDSINLNGIEGCQYFSTFK 230
+ S S + K + IV + + N K ++ P+ T S NL+ + + ++ +
Sbjct: 502 RTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPS-NLSDTQYKKLYNLYL 560
Query: 231 MISKSNKKAREYTVELTDEVVNLKDEIEIKLS-GSDNRNIVDDGLSQKLTAAEIEDLKND 407
+ K+ + Y + +NL D + + G D ++ LSQ A+ IE + +D
Sbjct: 561 VEFKAGRADVFYIDDNIKLSLNLNDYVVVDADRGQDLGRLIAQNLSQSEVASHIEKIPSD 620
Query: 408 ANRASDIIESLITNSNT 458
N ++ I +T
Sbjct: 621 RNGQLQNLDGAILEGDT 637
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 28.7 bits (61), Expect = 0.77
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 399 SDLRFLQLSVSVRVHHQRCFYYHYQIILSQSHLLD 295
+D+ FL L+ SVR R F YH + I + +LD
Sbjct: 227 NDIHFLMLNDSVRTEGYRDFVYHNKHIFAGKTVLD 261
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 543 PNLRTIAEIMFKLEPGKVQNLRI 611
PNL+T+ E+++K GKV RI
Sbjct: 147 PNLKTVRELLYKRGFGKVNKQRI 169
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 EYTVELTDEVVN-LKDEIEIK-LSGSDNRNIVDDGLSQKLTAAEIEDLKNDANRASD 425
E V+ T+E++ + ++ ++ LSG ++ NI+DDG A E K +AN SD
Sbjct: 127 ESVVKDTEEIIEQAQHDVSLRNLSGIEDENIIDDG-----ETAINEQKKREANVFSD 178
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +3
Query: 360 LSQKLTAAEIEDLKNDANRASDIIESLITN 449
L Q+L + ++ +ND+N ++D++++ +TN
Sbjct: 936 LIQELHSLIVDHFQNDSNSSADLLDAWVTN 965
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = -1
Query: 233 HFESRKVLTPLNAI*INTVSSYGNSRIRLIILVKLFEILLLDYNIVSYFNHIV 75
H + K+L + + + +Y N ++ I + LF LD N+ Y+++++
Sbjct: 1826 HASANKILIKTSKLIVQNAVTYSNYLLKSIKTLPLFH--FLDLNVTEYWDYLL 1876
>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 326
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 357 GLSQKLTAAEIEDLKNDANRASDIIE 434
GLS+KL A ++DL ND +A+ +++
Sbjct: 214 GLSEKLKAYNLQDLGNDTVQANLLLQ 239
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/74 (21%), Positives = 38/74 (51%)
Frame = +3
Query: 225 FKMISKSNKKAREYTVELTDEVVNLKDEIEIKLSGSDNRNIVDDGLSQKLTAAEIEDLKN 404
F+ K++ A++ L DE+V L+ E+E+ + + + D + K A +++
Sbjct: 481 FEQQIKAHHYAKDQVRNLNDEMVALRAELEVVKAMNSQPDDPDSDYAIKQNNA-LQNRLE 539
Query: 405 DANRASDIIESLIT 446
R +++++S +T
Sbjct: 540 ALTRENELLQSRVT 553
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/82 (21%), Positives = 39/82 (47%)
Frame = +3
Query: 240 KSNKKAREYTVELTDEVVNLKDEIEIKLSGSDNRNIVDDGLSQKLTAAEIEDLKNDANRA 419
K+ KK +E++ ++ + D ++ +++ I +DG+S+ ++A IED ++
Sbjct: 827 KAKKKHAAREMEISSQIPS-NDSSNVQTPTAESE-IEEDGVSEPISAEVIEDQSRNSEAE 884
Query: 420 SDIIESLITNSNTFHNKTEFSQ 485
++ S H K E Q
Sbjct: 885 NEKGLSTEQRDEKKHAKVESFQ 906
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 234 ISKSNKKAREYTVELTDEVVN-LKDEIEIKLSGSDNRNIVDDGLSQKLTAAEIEDLKNDA 410
++ S K + + + N +K + G + ++ D + L + +K D+
Sbjct: 767 LTLSKKLLSSWRDDFAQYITNSIKQPPNSESKGQSKKTLLHDSNMESLKSVISRIVKKDS 826
Query: 411 NRASDIIESLI 443
N++ D +ES I
Sbjct: 827 NQSDDSVESTI 837
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,648
Number of Sequences: 5004
Number of extensions: 37336
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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