Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_M14
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 154 5e-39
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 154 5e-39
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 1.8
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 2.4
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 4.2
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 25 5.5
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 7.3
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 24 9.6
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 24 9.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 9.6
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 154 bits (374), Expect = 5e-39
Identities = 72/109 (66%), Positives = 82/109 (75%)
Frame = +2
Query: 83 YLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHAL 262
Y F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++
Sbjct: 13 YTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSV 72
Query: 263 GVIVNKRVRGRIIPKRINIRVEHVKHSXCRXDFXKRVKENXRLLKEAKA 409
GV++ K V R + KR+N+R+EHVKHS CR DF RVK N KEAKA
Sbjct: 73 GVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKA 121
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 154 bits (374), Expect = 5e-39
Identities = 72/109 (66%), Positives = 82/109 (75%)
Frame = +2
Query: 83 YLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHAL 262
Y F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++
Sbjct: 13 YTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSV 72
Query: 263 GVIVNKRVRGRIIPKRINIRVEHVKHSXCRXDFXKRVKENXRLLKEAKA 409
GV++ K V R + KR+N+R+EHVKHS CR DF RVK N KEAKA
Sbjct: 73 GVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKA 121
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 1.8
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -3
Query: 56 EFVIFEPCVTKLDG 15
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 118 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 222
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 4.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 313 DALRYNPSANTLVDNHTES 257
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 262 RCDCQQACSRKDYTEAHQYPC*ACQALQXQTRLP 363
R + +Q + K+YTE H + ++ +TRLP
Sbjct: 471 RFELEQPLNSKNYTEHHARVSNVMEMIRNKTRLP 504
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 241 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 113
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 265 TESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVS 155
TES+++H + A CL ++ H + + V V+
Sbjct: 144 TESLTAHYLFAMCLYRGLYIPHWIYRIAVHKKVIGVA 180
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 230 GRVYNVTAHALGVIVN 277
G+ YN+T+H G VN
Sbjct: 234 GKTYNITSHVSGFYVN 249
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.2 bits (50), Expect = 9.6
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Frame = +1
Query: 16 PSSFVTQGSKMTNSKGYRRGTRVLVRSQV---------PHTWNYSAL 129
PSS +TQ K T K + T ++ + V P+ WNY+ L
Sbjct: 3 PSSSITQEDKATIRKYIPKSTNKIIAAAVVKLYVAYPDPNKWNYTGL 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,116
Number of Sequences: 5004
Number of extensions: 33416
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -