Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_M12
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    61   1e-10
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   1.1  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   6.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   6.1  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
 Frame = +2

Query: 383 LMLSKSRLTSLVVLTSMAGYALAPAP-FQLTTFAFCAVGTGLVSAAANSINQYHEVPFDA 559
           L L K RLT LVVL++M+ YALAP P     T A+  +GT L S +AN+ NQ  E   D 
Sbjct: 88  LELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLDC 147

Query: 560 QMSRTK 577
           QM+RT+
Sbjct: 148 QMARTR 153


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 340 FLPYSGVLGDFILYRCSCLSF 278
           F P SG+ G F++Y C+ L F
Sbjct: 155 FAPLSGIYGRFVVYFCTLLMF 175


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 417 TNDVNRDLDSIKQYXPVLLFLSYD---GVSFHTLVS 319
           T D   DLD+ + Y P+ +  +Y    G+SF ++ S
Sbjct: 390 TKDATFDLDAYQNYSPIFMSTTYALAFGLSFASITS 425


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 227 HLARISTAQNWRSKVPLKTQTTATVKNKVTQDTRVWKETPSYDRKSNT 370
           H+  IS   + +   P  T T+  + NKV+  T+ +  T SY   +NT
Sbjct: 729 HINVISPGPSLQVNAPY-TPTSGELGNKVSNPTKEFVSTSSYAPAANT 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,518
Number of Sequences: 5004
Number of extensions: 47809
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)