Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_M12
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical...    58   6e-09
AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical...    58   6e-09

>AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 29/65 (44%), Positives = 39/65 (60%)
 Frame = +2

Query: 383 LMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQ 562
           L L KS+L+  V  T+  G  +AP P    +     VGT L+S+AAN+ NQ  E P+DAQ
Sbjct: 93  LALCKSKLSLFVASTATCGVLMAPVPVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQ 152

Query: 563 MSRTK 577
           M RT+
Sbjct: 153 MRRTQ 157


>AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 29/65 (44%), Positives = 39/65 (60%)
 Frame = +2

Query: 383 LMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQ 562
           L L KS+L+  V  T+  G  +AP P    +     VGT L+S+AAN+ NQ  E P+DAQ
Sbjct: 93  LALCKSKLSLFVASTATCGVLMAPVPVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQ 152

Query: 563 MSRTK 577
           M RT+
Sbjct: 153 MRRTQ 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,040,988
Number of Sequences: 27780
Number of extensions: 263236
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)