Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_M07
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 286 8e-78
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 274 3e-74
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 264 3e-71
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.89
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 2.1
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 4.8
06_02_0084 - 11547820-11548773 28 6.3
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 8.3
06_01_0766 - 5729550-5731057,5731248-5731515 27 8.3
04_04_0049 - 22356139-22357649,22357764-22357995 27 8.3
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 8.3
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 286 bits (702), Expect = 8e-78
Identities = 130/181 (71%), Positives = 147/181 (81%)
Frame = +2
Query: 41 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 220
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 221 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 400
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 401 KPQGTVARVRXGQPIMSVRSXDRWKAQVIEALRRAKFXXPGRQKIYVSKKWGFTKYERHX 580
KPQGT ARV GQ ++SVR + EALRRAKF PGRQKI S+KWGFTK+ R
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREE 180
Query: 581 F 583
+
Sbjct: 181 Y 181
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 274 bits (673), Expect = 3e-74
Identities = 123/177 (69%), Positives = 143/177 (80%)
Frame = +2
Query: 53 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEA 232
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 233 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 412
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 413 TVARVRXGQPIMSVRSXDRWKAQVIEALRRAKFXXPGRQKIYVSKKWGFTKYERHXF 583
T ARVR GQ ++SVR D A EALRRAKF PGRQ++ S KWGFT+++R +
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEY 488
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 264 bits (648), Expect = 3e-71
Identities = 120/174 (68%), Positives = 138/174 (79%)
Frame = +2
Query: 62 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 241
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 242 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 421
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 422 RVRXGQPIMSVRSXDRWKAQVIEALRRAKFXXPGRQKIYVSKKWGFTKYERHXF 583
RV GQ ++SVR EALRRAKF PGRQKI S+KWGFTK+ R +
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEY 177
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 0.89
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 444 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 352
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 179 PLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 283
P C +HL SD Y S E ++AG+ C L K G
Sbjct: 592 PRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 164 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 256
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 347 LSCAGADRLQTGMRGAFGK--PQGTVARVRXGQPIMSVRSXDRWK 475
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 270 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 169
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>06_01_0766 - 5729550-5731057,5731248-5731515
Length = 591
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 119 VHPDRTS-ISDTVYFCSTGSISLAGAPW*SLQSDNH 15
+H D TS + D +FC ++ PW +++D++
Sbjct: 291 IHLDHTSTVEDKFFFCDEDQRAIRNIPWLVMRTDSY 326
>04_04_0049 - 22356139-22357649,22357764-22357995
Length = 580
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 107 RTSISDTVYFCSTGSISLAGAPW*SLQSDNH 15
R SD ++FC G +L W L SDN+
Sbjct: 281 RPGASDRLFFCDDGQDALRRVGWVVLLSDNY 311
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 182 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 66
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,100,173
Number of Sequences: 37544
Number of extensions: 412046
Number of successful extensions: 1121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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