Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_M06
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...   116   2e-27
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.72 
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    27   2.2  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   3.8  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    26   5.1  

>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score =  116 bits (280), Expect = 2e-27
 Identities = 55/140 (39%), Positives = 88/140 (62%)
 Frame = +2

Query: 191 LLTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVKSDY 370
           LLT IP+++ VV+MSF C  CG++N ++Q     +  G +    VE ++DLNR VVKS  
Sbjct: 50  LLTVIPYFREVVLMSFECPHCGFKNAQVQHAETIQPEGSKITFHVEDKEDLNRTVVKSQE 109

Query: 371 TSVRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAXIDEFVSXL 550
             V IPE+  EI    + G++TT+EGI+S  +  L+++QESR+   P     I+ F+  +
Sbjct: 110 AIVSIPEIQLEI--PGRLGQLTTIEGILSNVVDDLSKEQESRKESAPQLYDQINAFIEKV 167

Query: 551 QALKDLSTPWTLQLEDISGN 610
            +L+  S P+T+ ++DI+GN
Sbjct: 168 NSLRSGSVPFTITVDDITGN 187



 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 48/137 (35%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
 Frame = +2

Query: 194 LTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVKSDYT 373
           L  IPH+K V+IMS  C+ CGY++NE++ GGE    G +  L+V   +DL+R ++KS+  
Sbjct: 272 LLDIPHFKEVIIMSTVCDRCGYRSNEVKTGGEIPPKGRKITLKVMDAEDLSRDILKSETA 331

Query: 374 SVRIPELDFEIAAQSQKGEVTTVEGIISRAITGL--NQDQESRRSQHPDAAAXIDEFVSX 547
           S++IPEL  ++   +  G  TT+EG++++    L      +   S  P+  A   +F+  
Sbjct: 332 SLKIPELGLDLFPGTLGGRFTTIEGLLAQVYDELYGRVFSQETDSMTPEQVANWQQFLCN 391

Query: 548 LQALKDLSTPWTLQLED 598
           L A ++ +T +TL L+D
Sbjct: 392 LTAAREGATQFTLILDD 408



 Score = 29.5 bits (63), Expect = 0.41
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 109 TAEDPDPE-VTEIESFCINCHSNGMTRXI 192
           TAED +   V E+ES C+ C  NG T+ +
Sbjct: 22  TAEDREGNGVQEVESLCMECGKNGTTKLL 50


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 18/78 (23%), Positives = 32/78 (41%)
 Frame = +2

Query: 290 YEELGVRWKLRVESQQDLNRQVVKSDYTSVRIPELDFEIAAQSQKGEVTTVEGIISRAIT 469
           +  L V W  RV  Q  L+   + +D   V   + DF+ +  +  G +       S  + 
Sbjct: 120 FHVLSVNWSARVIEQTLLHHTDLTADLLCVHANDFDFDTSTNTTNGRI-LARNASSLLMN 178

Query: 470 GLNQDQESRRSQHPDAAA 523
             ++ +E RR    DA +
Sbjct: 179 STDKVREFRRIVQTDAVS 196


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 314 KLRVESQQDLNRQVVKSDYTSVRIPELDFEIAAQSQKGEVTTVEGIISR 460
           KL  +++    + ++K  +TS  I +LDF     S + E   V+ I SR
Sbjct: 371 KLSWDAEDPHRKDLIKKAFTSQDIEDLDFSAYIASSESEDEDVDVIRSR 419


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 53  DFHLQKCVPPTLNQCSETLQPRTPTQKSRKSSHF 154
           D  L +  PP+ +  S ++   TP   SRK  H+
Sbjct: 152 DIELTQRTPPSSSHTSSSILQNTPVTPSRKIFHY 185


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 20  LKTYALRYCFFDFHLQKCV 76
           +KT  LRY   D+ L KCV
Sbjct: 56  IKTSELRYLMIDYELAKCV 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,114
Number of Sequences: 5004
Number of extensions: 47169
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)