Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_M06
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0976 - 23222557-23222559,23223028-23223109,23223218-232232... 53 2e-07
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 34 0.11
07_01_1077 - 9687394-9687515,9696615-9696733,9696815-9697104,969... 30 1.3
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113... 30 1.7
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 30 1.7
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 30 1.7
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 29 3.0
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 28 5.2
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417... 28 6.9
01_01_0836 + 6527902-6528218,6529280-6529632,6529722-6529889,653... 28 6.9
>08_02_0976 -
23222557-23222559,23223028-23223109,23223218-23223258,
23223362-23223406,23223498-23223641
Length = 104
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/50 (42%), Positives = 33/50 (66%)
Frame = +2
Query: 191 LLTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQD 340
L+T IPH++ VV+M+F C CG +NNE+Q G+ + G ++L V Q+
Sbjct: 54 LMTMIPHFREVVLMAFECPHCGERNNEVQFAGQLQPKGCCYRLEVPRGQN 103
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -2
Query: 469 GYSSRYNSFDSCHLPFLTLCCYLKVQLGYPDAGVVTFDHLPVQILLGFNTQLPSDSELLI 290
G ++YN S + CC+L V L + GV F P LLG+ PS + L +
Sbjct: 272 GLFNKYNEKPSV-MAIKIACCFLTVILIWEIPGVFEFLWAPFTFLLGYKDPEPSKANLPL 330
Query: 289 FSSW 278
W
Sbjct: 331 LHEW 334
>07_01_1077 -
9687394-9687515,9696615-9696733,9696815-9697104,
9697191-9698075
Length = 471
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 64 PKMCSANLKPMFRDLTAEDPDPEVTEIES 150
PK+ +++ KP D T +DPDP VTE S
Sbjct: 385 PKIRTSSRKPSDIDPTGKDPDPAVTEPSS 413
>03_03_0153 -
14910420-14910769,14910946-14911008,14911084-14911339,
14911432-14911522,14911798-14912096,14912177-14912295,
14922536-14922594,14922676-14922965,14923052-14923567,
14923634-14923936
Length = 781
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 64 PKMCSANLKPMFRDLTAEDPDPEVTE 141
PK+ +++ KP D T +DPDP VTE
Sbjct: 363 PKIRTSSRKPSDIDPTGKDPDPTVTE 388
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +1
Query: 97 FRDLTAEDPDPEVTEIESFCINCHSNGMTRXIAHQDTALQECSDNVVFLRGVRLSEQRDS 276
F +L E+ E +FC NG + ++ AL CS N + + V +++
Sbjct: 820 FFNLEIASDASEICEKTAFCGYIFQNGTGSDLVQREVALLRCSQNKLHVVLVDMAQDGQD 879
Query: 277 TRRRI*GA 300
T R+ G+
Sbjct: 880 TMLRVLGS 887
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 386 PELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAXIDEFVSXLQALKD 565
P+LD+E+ + + E +E ++ D++ S PD A ++EF + L+ K
Sbjct: 632 PDLDYEVDSDDEWEEGIQIESLLD--------DKDEASSSPPDQCAEVEEFRALLRQQKV 683
Query: 566 LST 574
L+T
Sbjct: 684 LNT 686
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = -2
Query: 469 GYSSRYNSFDSCHLPFLTLCCYLKVQLGYPDAGVVTFDHLPVQILLGFNTQLPSDSELLI 290
G ++YN S + + C+L V L + GV P LLG+ PS + L +
Sbjct: 271 GLFNKYNEIPSV-MAMKIVSCFLAVILIWEIPGVFELLWSPFTFLLGYKDPEPSKANLPL 329
Query: 289 FSSW 278
W
Sbjct: 330 LHEW 333
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 28.3 bits (60), Expect = 5.2
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Frame = +2
Query: 296 ELGVRWKLRVESQQDLNRQVVKSDYTSVRIP-------ELDFE---IAAQSQKGEVTTVE 445
+LGV R ES+ LN K+DY + P LD + +A + +G T
Sbjct: 19 KLGVNIARREESRDFLNTDGDKNDYDWLLTPPETPLFRSLDDDEDKLAGPAPRGRAQTKP 78
Query: 446 GIISRAITGLNQDQESRRSQHPD 514
+ISR+ T N + SR S P+
Sbjct: 79 ILISRSSTMENAQRSSRSSASPN 101
>05_05_0062 +
22039410-22039985,22041467-22041555,22041638-22041770,
22041864-22042093,22042199-22042675,22042748-22042934,
22043536-22043574,22043624-22044052
Length = 719
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +2
Query: 380 RIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAXIDEFVSXLQAL 559
R+ +D+ +A QS V T +G ++RA+ G + + R++ +PD +FV + L
Sbjct: 458 RLAAVDYIVALQSDVF-VYTYDGNMARAVQGHRRFEGFRKTINPDRL----KFVELIDKL 512
Query: 560 KDLSTPW 580
+ S W
Sbjct: 513 DEGSMDW 519
>01_01_0836 +
6527902-6528218,6529280-6529632,6529722-6529889,
6530004-6530051,6530142-6530372,6530435-6530548,
6530638-6530723
Length = 438
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 53 DFHLQKCVPPTLNQCSETLQ 112
DFHL +C TLN+C+ LQ
Sbjct: 280 DFHLVRCPNCTLNKCAGVLQ 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,160,361
Number of Sequences: 37544
Number of extensions: 315590
Number of successful extensions: 774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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