Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_M06
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022981-1|AAG24206.1| 455|Caenorhabditis elegans Hypothetical ... 148 4e-36
Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical pr... 30 1.5
U40415-1|AAK39255.4| 445|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z83239-9|CAB05811.1| 517|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81099-4|CAB03189.1| 517|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF040652-4|AAB95021.2| 736|Caenorhabditis elegans Hypothetical ... 29 3.6
U80450-7|AAB37832.1| 293|Caenorhabditis elegans Hypothetical pr... 28 6.2
>AF022981-1|AAG24206.1| 455|Caenorhabditis elegans Hypothetical
protein W03F9.1 protein.
Length = 455
Score = 148 bits (358), Expect = 4e-36
Identities = 67/140 (47%), Positives = 94/140 (67%)
Frame = +2
Query: 191 LLTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVKSDY 370
+ T IP+Y+ V++MSF C CG++NNEIQ G +E G LRV+ +DL RQ+VKS+Y
Sbjct: 40 MCTSIPYYRAVILMSFECPHCGHKNNEIQSGEAVQEHGTLIVLRVQKPEDLRRQLVKSEY 99
Query: 371 TSVRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAXIDEFVSXL 550
S+ +PEL EI +SQ GEVTTVEG++ R GL+QDQE RR P+ A+ ID ++ +
Sbjct: 100 ASIEVPELQLEIPHKSQPGEVTTVEGVLERVHRGLSQDQEKRRLLDPEGASQIDAYLQKI 159
Query: 551 QALKDLSTPWTLQLEDISGN 610
+ +L WTL+L D +GN
Sbjct: 160 TSCMELGETWTLRLRDPTGN 179
Score = 89.8 bits (213), Expect = 1e-18
Identities = 44/139 (31%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Frame = +2
Query: 197 TRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVKSDYTS 376
T IP ++ V+IMS +C+ CGY++NE++ GG + G R +++E DL R V+K+D +
Sbjct: 261 TDIPFFQTVIIMSLACDRCGYKSNEVKSGGAIRDQGCRMSVKLEKDLDLARDVLKTDTCA 320
Query: 377 VRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQE--SRRSQHPDAAAXIDEFVSXL 550
+ IPE+D E+ + G TT+EG+++ L+ S + + F+ L
Sbjct: 321 LSIPEIDLEVGGNALCGRFTTIEGLLTATKEQLDAQSSFFMGDSAQTGEKSAVTTFLEKL 380
Query: 551 QALKDLSTPWTLQLEDISG 607
+ L P T+ L+D +G
Sbjct: 381 DDIIALRLPATIILDDPTG 399
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 76 SANLKPMFRDLTAEDPDPEVTEIESFCINCHSNGMTR 186
+A+ + ++R+L+A+D + ++S C C +G TR
Sbjct: 2 AADSQDIYRNLSADDYEAAPIVVDSVCPVCEEDGETR 38
>Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical
protein F54G8.2 protein.
Length = 812
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Frame = -2
Query: 460 SRYNSFDSCHLPFLTLCCYLKVQLGYPDAGVVTFD--------HLPVQILLGFNTQLPSD 305
+RY +D+ L + + V + Y + G+V+FD ++P+ +LLGF+T++ D
Sbjct: 206 ARYQQWDTIELE--QVIRQMMVDIDYDNDGIVSFDEWRRGGLTNIPLLVLLGFDTEMKED 263
>U40415-1|AAK39255.4| 445|Caenorhabditis elegans Hypothetical
protein K02G10.3 protein.
Length = 445
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 427 PFLTLCCYLKVQLGYPDAGVVTFDHLPVQILLGFNT 320
P LT CY + PD FD LPV ++ T
Sbjct: 14 PILTATCYETIHTWNPDCNGAFFDALPVGLIFSLKT 49
>Z83239-9|CAB05811.1| 517|Caenorhabditis elegans Hypothetical
protein K08F9.4 protein.
Length = 517
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 571 RQILQCLKXRHKLVNXSRRIGVLTPSRF 488
R+ ++C+ R K RRI VLTP RF
Sbjct: 383 RKRVECVNERTKRAREVRRISVLTPKRF 410
>Z81099-4|CAB03189.1| 517|Caenorhabditis elegans Hypothetical
protein K08F9.4 protein.
Length = 517
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 571 RQILQCLKXRHKLVNXSRRIGVLTPSRF 488
R+ ++C+ R K RRI VLTP RF
Sbjct: 383 RKRVECVNERTKRAREVRRISVLTPKRF 410
>AF040652-4|AAB95021.2| 736|Caenorhabditis elegans Hypothetical
protein T05A8.4 protein.
Length = 736
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +2
Query: 281 GGEYEELG-VR--WKLRVESQQDLNRQVVKSDYTSVRIPELDFEIAAQSQKGEVTTVEGI 451
G Y+ LG +R W S+ + Q ++ Y+S + +++ +I +S KGE G
Sbjct: 581 GRLYDNLGNIRQWWDNATISKFEHKAQCIEKQYSSYVLDQINMQINGKSTKGENIADNGG 640
Query: 452 ISRAITGLNQDQESRRSQHP 511
+ +A + E R S+ P
Sbjct: 641 LKQAYRAYKK-YEKRHSRPP 659
>U80450-7|AAB37832.1| 293|Caenorhabditis elegans Hypothetical
protein M01E11.1 protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 129 WVGVLGCKVSEHWFKVGGTH 70
W+G LGC + E + KVG H
Sbjct: 171 WIGTLGCIIGEIFRKVGMVH 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,955
Number of Sequences: 27780
Number of extensions: 268933
Number of successful extensions: 724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -