Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_M04
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 204 9e-54
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 50 3e-07
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.34
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.0
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 28 1.0
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 1.8
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.8
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.1
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 4.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.1
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 7.2
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 7.2
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 7.2
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 7.2
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 204 bits (498), Expect = 9e-54
Identities = 96/160 (60%), Positives = 124/160 (77%)
Frame = +3
Query: 165 EYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHI 344
+Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +++ P LE+LLP +
Sbjct: 21 KYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPVV 80
Query: 345 KGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALS 524
+GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL
Sbjct: 81 RGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALG 140
Query: 525 IPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISP 644
IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISP
Sbjct: 141 IPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISP 180
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 50.0 bits (114), Expect = 3e-07
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 19/173 (10%)
Frame = +3
Query: 180 FIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHI 344
+I N+ + +++IR +GS I MGK +M KA+ ++H +N L KLL
Sbjct: 41 WIFDVTNMRNTYLKRIRDDWKGSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL--- 96
Query: 345 KGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTSF 509
G VG +FT EV E+ VQ AR GA+AP + VIPA G P +
Sbjct: 97 HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDI 155
Query: 510 F---------QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNIS 641
+ L +PT + G + ++ D + G ++ + + LL + I+
Sbjct: 156 LLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGIT 208
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 256 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 363
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 562 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 437
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = -2
Query: 298 SLMALRIIVFFPMSTILEPRSEXXXXXXXCEPTLSAPTMKHFGYSXQELDDLNEVVRLPS 119
S+ A+ I FP L+P + P+L +M H ++ + + L S
Sbjct: 103 SVFAMAICTTFPHVHALKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNFQSFYQKLSLDS 162
Query: 118 SLVL 107
SL+L
Sbjct: 163 SLIL 166
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 322 RAGLLSRWSLMALRIIVFFPMSTILEPR 239
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 400 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 275
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 569 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 447
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.1
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 496 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 326
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 325 SRAGL 311
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 415 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 254
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.1
Identities = 27/109 (24%), Positives = 44/109 (40%)
Frame = +1
Query: 163 TSTQNVSSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHT 342
TST S+ P+T S SV PV+ S S T T+ + C T
Sbjct: 482 TSTPVTST--PLTTTNCTTSTSVPYTSTPVTSSNYTIS-----SSTPVTSTPVTTTNCTT 534
Query: 343 SRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTPAS 489
S + L + +P ++ + TNC T + + P+ + +TP +
Sbjct: 535 STSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSSTPVT 582
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 174 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 320
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 19 EFCPARKSCVLSCP*ISSKSLRH 87
E PA++ LSCP + SK + H
Sbjct: 489 EIVPAKERAYLSCPKVWSKIINH 511
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 23 FVPHGSRAFCLVLKFHRSPYA 85
F+PHG+R + +LK+ R Y+
Sbjct: 313 FLPHGARIYNTLLKYMRYQYS 333
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 569 IVDDFNSTL*NLGRDRKSL 513
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 289 PSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSF 468
PS + W T+ SR SR +S SP+ S + + K L L+ + +S++
Sbjct: 187 PSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTIPAIQKKKSL-LIEMMETESTY 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,851
Number of Sequences: 5004
Number of extensions: 61354
Number of successful extensions: 176
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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