Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_L23
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 72 5e-14
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 1.3
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 1.8
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 27 1.8
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 3.1
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.1
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 4.1
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 4.1
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 25 5.4
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 7.1
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz... 24 9.4
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 71.7 bits (168), Expect = 5e-14
Identities = 32/74 (43%), Positives = 45/74 (60%)
Frame = +2
Query: 218 YWKKLGLPVLVKEFGAIDYLDFSPVEPYYFAATCSVRVQVYDPVTKVVAKNISKFVEAAY 397
+W+ +PV+ KE+ AI + FS PY FA T RVQ+Y ++ V K I++F + AY
Sbjct: 26 FWRSFKVPVVAKEYSAITSIHFSAESPYDFAVTSGARVQIYGASSRSVKKTIARFKDTAY 85
Query: 398 GGCFRADGXLLVAG 439
G R DG LL+AG
Sbjct: 86 SGNIRKDGKLLLAG 99
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 218 YWKKLGLPVL--VKEFGAIDYLDFSPVEPYY 304
YW L PV +K+ + FSP+ PYY
Sbjct: 259 YWPALAAPVYPSMKDVPNNPFTPFSPINPYY 289
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 311 ATCSVRVQVYDPVTKVVAKNISKFVEAAYGGCFRADGXLLVAGSEE 448
+TCS R+ +YD T V+ +++ + + F G LV GS +
Sbjct: 422 STCSPRINIYDTKTGVLIRSLEEHEGDVW--TFEYVGDTLVTGSTD 465
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 11 CRMA-LFNVGFVFTYFANVFMED 76
C++ +F +GFVFTY A ++D
Sbjct: 95 CKLCVIFGLGFVFTYLAEQIVQD 117
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 3.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 60 LAKYVNTNPTLNSAMRH 10
LA ++N NP + S MRH
Sbjct: 513 LAPFINDNPLIQSGMRH 529
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 263 AIDYLDFSPVEPYYFAATCSVRVQVYDPVTKVVAKNI--SKFVE 388
AID +D S + +Y + ++R Q+Y V + +I S+F++
Sbjct: 411 AIDPIDASDISDHYLFSRRTIRKQLYSSVDSNIISSIWQSEFIK 454
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 296 PYYFAATCSVRVQVYDPVTKVVAKNISKFVEAAYGGCFRADG 421
PY F + S + + Y + K+ K I+ VEA+ G C G
Sbjct: 998 PYGFQKSTSDKCR-YAVLQKLSVKRIADMVEASIGACLLDSG 1038
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 4.1
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 251 KEFGAIDYLDFSPVEPYYFAATCSVRVQVYDPVTKVVAKNISKFVEAAYGGCFRADGXLL 430
K G++ + F P PY AT V++Y+ V + + K + V+ + G +
Sbjct: 567 KSKGSVQAVTFHPTMPYLLVAT-QRYVRIYNLVKQELVKTLLTGVKWVSSLSVHSSGDHV 625
Query: 431 VAGS 442
+ GS
Sbjct: 626 IIGS 629
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 266 IDYLDFSPV--EPYYFAATCSVRVQVYDPVTKVVAKNISKFVEAAYGGCFRADGXLLVAG 439
++Y+++ P +PY A ++V+D TK + + F + ++++G
Sbjct: 187 VNYVNYYPAGDKPYLITAGDDNLIKVWDYQTKACVRILEGHTNNVSFAFFHSKFPIIISG 246
Query: 440 SEE 448
SE+
Sbjct: 247 SED 249
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 7.1
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = +2
Query: 266 IDYLDFSPVEPYYFAA 313
++Y+ ++PV+PY FA+
Sbjct: 473 VNYVAYNPVDPYQFAS 488
>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 311 ATCSVRVQVYDPVTKVVAKNIS 376
AT S+ +VYD + + KNIS
Sbjct: 196 ATASMETKVYDVIKMLAEKNIS 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,524
Number of Sequences: 5004
Number of extensions: 32490
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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