Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_L21
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    27   1.3  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   5.2  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.8  
SPAC664.12c |||LYR family protein|Schizosaccharomyces pombe|chr ...    25   6.8  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    24   9.0  
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    24   9.0  

>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 31 SGAFVSSDATVFESRWRVPI 90
          S  F S D T + SRWR P+
Sbjct: 34 SEQFTSEDITTWRSRWRAPV 53


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 196 ITQIIILRV*FLLHDVIPSPWKSIVNI 116
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 162 KNQTRKIIICVITGGRT 212
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPAC664.12c |||LYR family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 79

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 332 ISRCVAHXRCRCLWAPVTSNIPVNTRWAVSSVH 430
           + R V H   RCL A      P N RW ++ VH
Sbjct: 6   LQRQVIHFYRRCLHAAKAKEQPYNERW-MAFVH 37


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 164 FIARCYSFTVEVNREHLLSTYFIRKIGTRQRDSNTVASLDTNAPD 30
           F +  Y F  +    +    +FI   GT+   +   A+LD + PD
Sbjct: 201 FSSHTYKFVNDKGEFYYCKWHFITNQGTKGLTNEEAAALDGSNPD 245


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 145 PSPWKSIVNIC*VR--ISLEKLVPASEIRTPLHRSIR 41
           P  WK+++ +   R  ISL  +VP+S+    +HR +R
Sbjct: 79  PQYWKNLLELDYPRNLISLGFIVPSSKDGAKVHRELR 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,345
Number of Sequences: 5004
Number of extensions: 35544
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)