Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_L21
         (441 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK056528-1|BAB71205.1|  963|Homo sapiens protein ( Homo sapiens ...    29   5.4  
AC074362-1|AAX81997.1|   99|Homo sapiens unknown protein.              29   5.4  
AB077881-1|BAB83897.1| 1306|Homo sapiens caspr5 protein.               29   5.4  

>AK056528-1|BAB71205.1|  963|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31966 fis, clone NT2RP7007925, weakly similar to
           Homo sapiens contactin associated protein (Caspr) mRNA.
           ).
          Length = 963

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 424 GAHSPPGVNWYV-TGYWSPQTS 362
           G HSP  +NW V TG WSP  S
Sbjct: 51  GTHSPAQLNWRVGTGGWSPADS 72


>AC074362-1|AAX81997.1|   99|Homo sapiens unknown protein.
          Length = 99

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 424 GAHSPPGVNWYV-TGYWSPQTS 362
           G HSP  +NW V TG WSP  S
Sbjct: 23  GTHSPAQLNWRVGTGGWSPADS 44


>AB077881-1|BAB83897.1| 1306|Homo sapiens caspr5 protein.
          Length = 1306

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 424 GAHSPPGVNWYV-TGYWSPQTS 362
           G HSP  +NW V TG WSP  S
Sbjct: 51  GTHSPAQLNWRVGTGGWSPADS 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,655,914
Number of Sequences: 237096
Number of extensions: 1433923
Number of successful extensions: 2327
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2327
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)