Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_L16
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 95 5e-21
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 89 3e-19
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.064
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.79
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.0
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 27 1.4
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 1.8
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.2
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 4.2
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 5.6
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 5.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 5.6
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 5.6
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 5.6
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 7.3
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 7.3
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 24 9.7
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 24 9.7
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 24 9.7
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 24 9.7
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 95.1 bits (226), Expect = 5e-21
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = +3
Query: 186 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 359
P KV K MG +I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R
Sbjct: 50 PLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSA 109
Query: 360 LRFNTRVRFEERYKSGKNXWFFQKLRF 440
R + FEE+Y+SGK+ WFF LRF
Sbjct: 110 ARKTVKKTFEEKYQSGKSAWFFTPLRF 136
Score = 68.5 bits (160), Expect = 5e-13
Identities = 26/50 (52%), Positives = 39/50 (78%)
Frame = +2
Query: 38 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYP 187
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYP 50
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 89.0 bits (211), Expect = 3e-19
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 186 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 359
P KV K MG +I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R
Sbjct: 50 PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSA 109
Query: 360 LRFNTRVRFEERYKSGKNXWFFQKLRF 440
+ + FEE+Y++GK+ WFF LRF
Sbjct: 110 AKKTVKNTFEEKYQTGKSAWFFTPLRF 136
Score = 72.1 bits (169), Expect = 4e-14
Identities = 28/50 (56%), Positives = 40/50 (80%)
Frame = +2
Query: 38 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYP 187
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYP 50
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.064
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 29 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 130
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.79
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 210 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 344
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 44 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 127
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 153 GMPSSLVSTGTPGKVHKRMGKNKIHKRSKIK 245
G P+SLVS+ T K+H +G+ I K S+++
Sbjct: 184 GSPTSLVSSNTASKLH--LGRKDIVKLSELR 212
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 144 LSEVPSS*FLTTIALRPAYRPLKTSTTLPGFIILPILEGYSLY 16
L E+P + F T+ AY P S T+ G + G +Y
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 3.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 114 SRITTKVPPTSRTGMPSSLVSTGT 185
SR+ T +PP S + +P+ +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 4.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 73 QHYFTRLHYLTHLGGIFPLLVD 8
Q YFT ++ G +FP +VD
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVD 824
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 5.6
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 189 GKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD---FSFEKFSAKDLKDPAKRKK 359
G V + +G +IHK PF N N +TV F+ E + L D K K
Sbjct: 286 GLVTQPLGLFRIHKLPLALPFTNHANSNEAGDLSFTVSKRRFTIEPWVLPPLDDEQKDTK 345
Query: 360 L 362
+
Sbjct: 346 I 346
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 192 KVHKRMGKNKIHKRSKIKPFVKVV 263
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 314 FKTEVNCITCWHQVIVVYNLDERLYLGPLVDFILSH 207
F V I C H V + + ++ GP ++F++ H
Sbjct: 90 FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 297 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 413
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 297 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 395
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.6 bits (51), Expect = 7.3
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -2
Query: 395 PLFKTYSRVETQLLTLSRVFQVFCAEFFKTEVNCITCWHQVIVVYNLDERLYLGPLVDFI 216
P+++ + + T S + CA+F E N + WH YNL R Y + D +
Sbjct: 749 PVYEDWHLLIFNASTSSMMKTWLCAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNV 805
Query: 215 LSHP 204
P
Sbjct: 806 SDLP 809
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 7.3
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 240 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 377
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 171 VSTGTPGKVHKRMGKNKIHKR 233
+S+GT GKV+K + N KR
Sbjct: 11 ISSGTYGKVYKAVSSNSNDKR 31
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 24.2 bits (50), Expect = 9.7
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +3
Query: 303 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNXWFFQKLR 437
+SF F D K+ K K R E Y +N W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 341 VFQVFCAEFFKTEVNCITCWHQVIVVYNLDERLY 240
V+QVFC F + I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 26 YPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 127
Y ++ G + GK+V+++SG A K+ + + D
Sbjct: 40 YSTESGMLFHAGKLVIIMSGLPARGKSNIAVSID 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,822
Number of Sequences: 5004
Number of extensions: 35614
Number of successful extensions: 125
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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