Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_L14
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   147   1e-36
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   147   1e-36
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    29   0.37 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.50 
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    28   1.1  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.5  
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    27   2.0  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   3.5  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   3.5  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.6  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   6.1  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   6.1  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   8.1  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  147 bits (356), Expect = 1e-36
 Identities = 69/105 (65%), Positives = 79/105 (75%), Gaps = 2/105 (1%)
 Frame = +3

Query: 39  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 219 SSEALEAGRICCNKYLAKELRKGSVPYPHETSPF--PRLSASIKC 347
           +SEALEA RIC NKYL K   K S        PF   R++  + C
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSC 105



 Score =  130 bits (313), Expect = 2e-31
 Identities = 60/84 (71%), Positives = 70/84 (83%)
 Frame = +2

Query: 329 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSXDRWKAQVIEALRRAK 508
           +RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IEALRR +
Sbjct: 97  VRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQ 156

Query: 509 FKFPGRQKIYVSXKWGFTKYERDE 580
           +KFPG+Q+I VS KWGF++Y RDE
Sbjct: 157 YKFPGQQRIIVSKKWGFSQYARDE 180


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  147 bits (356), Expect = 1e-36
 Identities = 69/105 (65%), Positives = 79/105 (75%), Gaps = 2/105 (1%)
 Frame = +3

Query: 39  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 219 SSEALEAGRICCNKYLAKELRKGSVPYPHETSPF--PRLSASIKC 347
           +SEALEA RIC NKYL K   K S        PF   R++  + C
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSC 105



 Score =  129 bits (312), Expect = 3e-31
 Identities = 60/84 (71%), Positives = 70/84 (83%)
 Frame = +2

Query: 329 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSXDRWKAQVIEALRRAK 508
           +RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IEALRR +
Sbjct: 97  VRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQ 156

Query: 509 FKFPGRQKIYVSXKWGFTKYERDE 580
           +KFPG+Q+I VS KWGF++Y RDE
Sbjct: 157 YKFPGQQRIIVSKKWGFSQYARDE 180


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 264 LAKELRKGSVPYPHETSPFPRLSASIKCYHALELIGSRLGCVVRLASLR 410
           + ++L+ G +P P+     PRLSA  K     + +GS    V+R+ +L+
Sbjct: 419 IPRKLKSGFIP-PYAKRVVPRLSAKYKLVDETKDMGSGATAVIRIVTLK 466


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 63  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 239
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 240 G 242
           G
Sbjct: 94  G 94


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +3

Query: 192 LVSDEYEQLSSEALEAGRICCNKYLAKELRKGSVPYP 302
           LVSDE + +   A + G + C+   AKELRK +VP P
Sbjct: 154 LVSDEKKSIF--AAKCGHLFCST-CAKELRKKTVPCP 187


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 120 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 239
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 374 QTGMRGAFGKPQGTVARVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYV 541
           +T M    G  +   AR+ IG+ +  +      K     AL++A F  PG+ +I V
Sbjct: 124 ETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIV 179


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 154 RERPLTTFHCACTWCPTNMNS 216
           R RP +T H +CT+C   + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 483 SSRLCAVPSSSSPDVKRSTYQXSGVS 560
           SS +   P+S SPD+K   YQ  G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 415  STLRLAKRTTHPSLEPISSS 356
            +T +LAKR T PSL P  S+
Sbjct: 957  TTTKLAKRITQPSLSPARST 976


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +3

Query: 141  DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLAKELRK 284
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ K ++K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 239  CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 123
            CL  L   L   + H++ ++W+ +N R LL + +  + G
Sbjct: 940  CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 106 VGVYLIPRSVSSIWV 150
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 289 DPFRSSLARYLLQQIR 242
           DPFR+  +RY+LQ+I+
Sbjct: 361 DPFRAVQSRYILQEIQ 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,871
Number of Sequences: 5004
Number of extensions: 56240
Number of successful extensions: 185
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)