Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_L13
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 51 9e-08
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 51 9e-08
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 30 0.23
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 1.2
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 26 2.8
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 2.8
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.5
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3... 25 8.5
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 51.2 bits (117), Expect = 9e-08
Identities = 27/62 (43%), Positives = 33/62 (53%)
Frame = +1
Query: 169 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAXRNMKPEVRKAXREQ 348
+++WTVLYRR KKG EE IVGA+L I RN +PEVR A R
Sbjct: 48 RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAA 107
Query: 349 AI 354
A+
Sbjct: 108 AL 109
Score = 32.7 bits (71), Expect = 0.032
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 57 TKYIQAMARPWLKVDGKTFTFLNSKCEAAHLMRRNPR 167
+K R +++ D K F F+N K E+ L R+NPR
Sbjct: 11 SKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47
Score = 31.1 bits (67), Expect = 0.098
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 26 MKIGLCAYSGYKIYPGHGK 82
MK+ +C++SG K+YPG G+
Sbjct: 1 MKVEVCSFSGSKVYPGAGR 19
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 51.2 bits (117), Expect = 9e-08
Identities = 27/62 (43%), Positives = 33/62 (53%)
Frame = +1
Query: 169 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAXRNMKPEVRKAXREQ 348
+++WTVLYRR KKG EE IVGA+L I RN +PEVR A R
Sbjct: 48 RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAA 107
Query: 349 AI 354
A+
Sbjct: 108 AL 109
Score = 32.7 bits (71), Expect = 0.032
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 57 TKYIQAMARPWLKVDGKTFTFLNSKCEAAHLMRRNPR 167
+K R +++ D K F F+N K E+ L R+NPR
Sbjct: 11 SKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47
Score = 31.1 bits (67), Expect = 0.098
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 26 MKIGLCAYSGYKIYPGHGK 82
MK+ +C++SG K+YPG G+
Sbjct: 1 MKVEVCSFSGSKVYPGAGR 19
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 29.9 bits (64), Expect = 0.23
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 87 WLKVDGKTFTFLNSKCEAAHLMRRNPR 167
+++ D K F F SKC M+RNPR
Sbjct: 21 FVRNDSKVFRFCRSKCHKNFKMKRNPR 47
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -3
Query: 122 QECEGFSIHFKP-WSCHGLDI 63
Q +G S+H+ P W CHGL I
Sbjct: 111 QLLKGRSVHYVPGWDCHGLPI 131
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 137 SRPFDEEESSLK*HGLSCTGASSKRAKRKNKQRNV 241
S+ F EE L G +CT S++ ++KN + N+
Sbjct: 421 SQFFQEEMIHLLEMGEACTSRESQKTRKKNLKENI 455
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 2.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -3
Query: 299 IMSLSEAPTIARWNFWVLL---VRFFACSSSWPFLNLRLYRTVHVTLARI 159
I++L A W W + V S W L+ L + H+TLA+I
Sbjct: 600 IVALQNMDPAAGWGEWFAVSIPVSLLCIFSIWFLLSFGLLKDEHITLAKI 649
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 365 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 270
+ L ACS C + TS I S S AP++
Sbjct: 105 YFTLQACSTCTISTSSLSYSGTISSTSIAPSM 136
>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
L31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 154 GGILAKVTWTVLYRRKFKKGQ 216
GG++ KV W + RRK++ Q
Sbjct: 13 GGLVHKVPWRLSQRRKYRHRQ 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,875
Number of Sequences: 5004
Number of extensions: 29235
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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