Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_L13
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    39   0.002
Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z69646-4|CAD36489.1|  611|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z69646-3|CAA93476.2|  630|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF497829-1|AAM18107.1|  611|Caenorhabditis elegans putative Na-H...    28   3.3  
AF497828-1|AAM18106.1|  630|Caenorhabditis elegans putative Na-H...    28   3.3  
AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical...    27   5.8  
AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical...    27   5.8  
AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical ...    27   5.8  
U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
          protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 26 MKIGLCAYSGYKIYPGHGKTM 88
          MK+  C YSGYKI+PGHGK +
Sbjct: 1  MKVETCVYSGYKIHPGHGKRL 21



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 90  LKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGR 224
           ++ DGK   FL+ K      +RRNPR        + + +KG  G+
Sbjct: 22  VRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKGTHGQ 66


>Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical
           protein C47A4.2c protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 368 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 207
           S A ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F
Sbjct: 125 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 178


>Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical
           protein C47A4.2b protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 368 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 207
           S A ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F
Sbjct: 193 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 246


>Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical
           protein C47A4.2a protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 368 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 207
           S A ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F
Sbjct: 187 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 240


>Z69646-4|CAD36489.1|  611|Caenorhabditis elegans Hypothetical
           protein F57C7.2b protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 145 WAASHFEFRNVKVFPSTLSHGLAMAWIYFVSTIGAKSDLHFD-LTKTKS 2
           WA  H+ FR +     TL +GL + ++     +G      FD +TK K+
Sbjct: 61  WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNKT 109


>Z69646-3|CAA93476.2|  630|Caenorhabditis elegans Hypothetical
           protein F57C7.2a protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 145 WAASHFEFRNVKVFPSTLSHGLAMAWIYFVSTIGAKSDLHFD-LTKTKS 2
           WA  H+ FR +     TL +GL + ++     +G      FD +TK K+
Sbjct: 61  WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNKT 109


>AF497829-1|AAM18107.1|  611|Caenorhabditis elegans putative Na-H
           exchanger isoform 5b protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 145 WAASHFEFRNVKVFPSTLSHGLAMAWIYFVSTIGAKSDLHFD-LTKTKS 2
           WA  H+ FR +     TL +GL + ++     +G      FD +TK K+
Sbjct: 61  WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNKT 109


>AF497828-1|AAM18106.1|  630|Caenorhabditis elegans putative Na-H
           exchanger isoform 5a protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 145 WAASHFEFRNVKVFPSTLSHGLAMAWIYFVSTIGAKSDLHFD-LTKTKS 2
           WA  H+ FR +     TL +GL + ++     +G      FD +TK K+
Sbjct: 61  WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNKT 109


>AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3b protein.
          Length = 622

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 113 EGFSIHFKPWSCHG--LDIFCIHYRRKVRSSF*PDKN 9
           E + + FK W CHG  +D  C       R  + P KN
Sbjct: 358 EQYELSFKVWQCHGRMVDAPCSRVAHIYRCKYAPFKN 394


>AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3a protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 113 EGFSIHFKPWSCHG--LDIFCIHYRRKVRSSF*PDKN 9
           E + + FK W CHG  +D  C       R  + P KN
Sbjct: 420 EQYELSFKVWQCHGRMVDAPCSRVAHIYRCKYAPFKN 456


>AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical
           protein F39G3.2 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -3

Query: 188 RTVHVTLARIPPHQMGGFTF*IQ------ECEGFSIHFKPWSCHGLDIFCIHY 48
           RT+ + +  + P + GGFT  +Q      E    ++  + W   G+  F ++Y
Sbjct: 151 RTISLKVQEVHPKRKGGFTVCVQPVYWYSEYHNIALFIETWRSQGVTRFIVYY 203


>U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical
           protein C18H9.5 protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 356 LMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 207
           +MA    +   S FIL + I  +    + A W+ + L V FF   ++ PF
Sbjct: 397 IMAVISMSSWVSAFILPIVIGVICPTNSHAEWSRFYLFVAFFVVCTNLPF 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,168,852
Number of Sequences: 27780
Number of extensions: 164484
Number of successful extensions: 325
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)