Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_L09
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   5.6  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    25   7.3  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   9.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.7  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 485 SIXAXRFQXSHSDNAVLIF-FFPQILDDFRSLFPCILXYVVQVFHLEGYVFHEV 327
           ++ A  F+ S  + A +I  FF   L+DF S+FP  L   V+     G++ + V
Sbjct: 301 NVTATPFEVSDMNWAYIIASFFRTCLNDFVSVFPEWLKGFVEEKRTIGFIIYSV 354


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 273 AQYEPMETEFVNEVAIHGDFVKDVAFQVENLDYIXE 380
           A+Y+ MET  V  VA   D + D+   ++++ ++ E
Sbjct: 37  AKYKFMETSVVRRVASLDDKIPDIRKTLQSVQFLKE 72


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 171 SSRSNWPLVWRSKPKT*RGQKPRNDHRPAFCPCPCKS 61
           SSR+  P+    KP   R   P   + P  C  PCK+
Sbjct: 26  SSRTIVPIASIYKPLNERPDLPPVLYEPVTCKAPCKA 62


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 116  PRHVLGFERQTSGQLLRDEVW--LRAIGLQRSGDGF 217
            P + +GF+  T    LR  +W  LR+  L R+  GF
Sbjct: 961  PFYCIGFKNATPEYTLRTRIWASLRSQTLYRTVSGF 996


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,283
Number of Sequences: 5004
Number of extensions: 45829
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)