Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_L09
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0506 - 3677786-3677972,3678731-3679884 40 0.001
02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149 28 4.3
05_03_0308 - 12061871-12063205,12063340-12063671,12063974-12064052 28 5.6
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 27 7.5
01_06_0157 + 27075179-27075529,27075849-27076043,27077705-270780... 27 7.5
03_04_0196 - 18365840-18366701,18366875-18366950,18366989-183672... 27 9.9
02_04_0335 + 22117902-22119869 27 9.9
01_06_0772 - 31864564-31864653,31864733-31864816,31865547-318656... 27 9.9
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 27 9.9
>02_01_0506 - 3677786-3677972,3678731-3679884
Length = 446
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 87 PDDGRF--LAFDHVTFWVSNAKQAASYYVTRFGFEPLAYSGLETGSRQISSHAVRMNKII 260
P RF LAF HV W ++A AA + G A S L TG+ +S +R +
Sbjct: 39 PRSDRFQALAFHHVELWCADAASAAGRFAFALGAPLAARSDLSTGNSAHASLLLRSASVA 98
Query: 261 FVFQAQY 281
F+F A Y
Sbjct: 99 FLFTAPY 105
>02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149
Length = 272
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 278 LRLKHEDYLIHSDGMRRNLSRTRLQTAVSQWLE 180
LR HED LI M R + T +Q + QWLE
Sbjct: 33 LRPIHEDELIILFSMVRKIKVTPVQCMICQWLE 65
>05_03_0308 - 12061871-12063205,12063340-12063671,12063974-12064052
Length = 581
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 240 RHETKSV*NPSPDR-CKPMARSQTSSRSNWPLVWRSKPKT 124
R+ K + +P P + + +A+ ++SS VWR KPKT
Sbjct: 528 RYWRKPIKSPVPTKKLEQLAQKKSSSAPKSKKVWRKKPKT 567
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 338 RRSLPSGKLGLHXGVCKETGSESRQGSVGRKRSIRRCQNGYXEN 469
R++ GKLG H + + S SR G + S +NG+ E+
Sbjct: 485 RKAGEPGKLGDHDAYGRVSTSRSRHGGSAKNMSSNISENGWEEH 528
>01_06_0157 +
27075179-27075529,27075849-27076043,27077705-27078036,
27078157-27078577
Length = 432
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 357 ENLDYIXEYARKQGAKVVKDLWEEKDQYG 443
+ LD++ ARK G KV+ L + D +G
Sbjct: 117 KGLDFVLSEARKYGIKVILSLVDNYDSFG 145
>03_04_0196 -
18365840-18366701,18366875-18366950,18366989-18367237,
18367819-18367837
Length = 401
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 278 LRLKHEDYLIHSDGMRRNLSRTRLQTAVSQWLE 180
LRL ED LI M R + + +Q + QWLE
Sbjct: 144 LRLIREDELIILFSMVRKIKVSHVQCMIRQWLE 176
>02_04_0335 + 22117902-22119869
Length = 655
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -2
Query: 266 HEDYLIHSDGMRRNLSRTRLQTAVSQWLEAKPRHVVTGRLFGVRNPKRDVVKSQETTIVR 87
H D + G R +R R+ +S E +P +T FGV + V + TT
Sbjct: 191 HTDNTVSGGGARHGHARRRVVRQLSPEPEPEPSATMTETSFGVSSDVVTTVTNPVTTQPA 250
Query: 86 LSALVRVSRH 57
+A RH
Sbjct: 251 AAAAQSQRRH 260
>01_06_0772 -
31864564-31864653,31864733-31864816,31865547-31865603,
31865700-31865828,31866704-31866790,31866856-31866933,
31867150-31867306,31868000-31868141,31868835-31868986,
31869118-31869371,31869819-31869896
Length = 435
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 317 CDFVYEFGFHWLILRLKHEDY 255
C F+Y GF W IL LK + Y
Sbjct: 155 CYFLYIAGFVWFILTLKKKTY 175
>01_06_0595 - 30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = -2
Query: 269 KHEDYLIHSDGMRRNLSRTRLQTAVSQWLEAKPRHVVTGRLFGV 138
KH + +RR L + R ++ + W+++ P + G + V
Sbjct: 885 KHSPLSSGGENLRRRLKKDRASSSKTTWMQSDPHILTEGEIIEV 928
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,433,076
Number of Sequences: 37544
Number of extensions: 290126
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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