Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_L07
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 101 1e-22
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 28 0.89
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 28 1.2
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 3.6
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.7
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 6.2
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 25 6.2
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 25 6.2
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 8.3
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 101 bits (241), Expect = 1e-22
Identities = 57/124 (45%), Positives = 78/124 (62%)
Frame = +2
Query: 206 DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKXVAK 385
D+ I G NPSAE+A+E + E+ ++V + RL T +F DKKSY Y+K YMK A+
Sbjct: 42 DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKAR 98
Query: 386 LEXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDXDGMVAMMEYRDFDGTQIPIM 565
L+ P++V VF+ N +K IL FK+ F+ GESMD D MV +M YR+ DG P M
Sbjct: 99 LQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYM 156
Query: 566 MFFK 577
+FFK
Sbjct: 157 IFFK 160
Score = 35.1 bits (77), Expect = 0.008
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 115 DEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 204
DE+ SD Y +K VD+++YE ++VT QG
Sbjct: 11 DELVSDAYDLKEVDDIVYEADCQMVTVKQG 40
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 28.3 bits (60), Expect = 0.89
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 301 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDISPVL 194
V++D +NS LDG + + S R +T LD+S ++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLSDIV 376
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 281 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKXVAKLEXKAPDQVEVFKT 427
+D V ++L+E F ++K T+YLK + K + PD VE T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 213 WISALCSRHQPTGHFVNNFIDQFHFVGVREHLISQ 109
W S CS+ TG +NFI F G I Q
Sbjct: 216 WFSRRCSKINITGSVFDNFIPSFFSFGTHGDGIKQ 250
>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 559 WYLXTIKVSIFHHGNHAITIHRLPSKELKFL 467
WY+ T K+SI N+ + +R P + FL
Sbjct: 12 WYMKTDKISIDETSNNMSSKYRAPQDDPMFL 42
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 481 ELKFLKPAEDVFHYFVHVCFKYFNLVR 401
+ FLKP ++ YF+ + +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +2
Query: 65 PPPIHQNEDL*GHYHW 112
PPP H E H+HW
Sbjct: 50 PPPRHHKEHKKSHHHW 65
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 73 NPSK*RSIRTLSLADEMFSDTYKMKLVDE 159
NP+ + + +SLA E+ SD + KL D+
Sbjct: 38 NPNGEKKFKEISLAYEVLSDPQRRKLYDQ 66
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 218 RSGYQPCALVTNLPVTS*ITSSTNFIL*VSENISSASDNV 99
RS Y A +N P + +T ST +S+N SS+S+++
Sbjct: 337 RSAYSTSANYSNTPPRNTVTPSTARSSTLSQNPSSSSNSI 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,796
Number of Sequences: 5004
Number of extensions: 43042
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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