Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_K21
(443 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 144 5e-36
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 1.3
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 1.7
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 4.0
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 25 4.0
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 24 9.1
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 24 9.1
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 24 9.1
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 24 9.1
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 144 bits (349), Expect = 5e-36
Identities = 71/136 (52%), Positives = 100/136 (73%), Gaps = 2/136 (1%)
Frame = +2
Query: 41 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 214
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 215 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKXPRSRTLTSV 394
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QK PRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 395 YDAILEDLVFPADIXG 442
++AILED+VFP +I G
Sbjct: 124 HNAILEDIVFPTEIIG 139
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 333 LGLGRILRSPTKTTCLPLNFFSSSRTS 253
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 203 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 295
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 379 P*AWXLLFVSNTSFVAGLRQDLTVSN 302
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 4.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 361 KXATLKDIDLCVRCYPRGLGLPC 429
+ AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 24.2 bits (50), Expect = 9.1
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +2
Query: 5 FSLPXKL----SXMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKE 172
F +P L S ++ K++ AS E F + Q + + + KA+ L KE
Sbjct: 113 FDIPTSLLRSDSTLTAKLLVASFGETIPFSLPLGQLSINVPPSLYHKAEFSPLDELSPKE 172
Query: 173 IELH 184
+ LH
Sbjct: 173 VILH 176
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 323 PKPSHKTRVANKQKXPRSRTLTSVYDAILEDLVF 424
P S + R N+++ RSR S + + LED+++
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIY 82
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.2 bits (50), Expect = 9.1
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +2
Query: 260 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKXPRSRTLTSVYDAILE 412
++LEK+F G + + PK + K RSR L + + E
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFFAKVPE 158
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 292 MFTTELLFELTDKPDLNLL 236
+F +E+ F++ KP LNLL
Sbjct: 436 LFLSEMAFDILVKPQLNLL 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,251
Number of Sequences: 5004
Number of extensions: 29907
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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