Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_K19
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   170   8e-44
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   3.5  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   3.5  
SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2...    25   6.1  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    25   6.1  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    24   8.1  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    24   8.1  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    24   8.1  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  170 bits (413), Expect = 8e-44
 Identities = 77/129 (59%), Positives = 96/129 (74%)
 Frame = +1

Query: 28  ERTFIMVKPDGVQRGLVGTIIERLEKKGFKLVGLKFVWPSEXLLQQHYSDLASRPFFPGL 207
           E+TFI VKPD VQRGL+G II + E KG+KL  LKF+ PS  L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 208 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVE 387
           V +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+E
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIE 123

Query: 388 SXKNEIGLW 414
           S   EI LW
Sbjct: 124 SANREIKLW 132


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 302 GLVAPSI*RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 186
           G + P   RP  T+L P  T+ TT   +    RP  K +
Sbjct: 359 GSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +1

Query: 205 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSQP--GTIRGDLCIQVGR--NIIH 369
           L++     P++  V  GL +++ G ++   T+P       GT+ GD C+++G   NI+H
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405


>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +1

Query: 88  IERLEKKGFKLVGLKFVWPSEXLLQQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVV 267
           +E+L+ + +  VG  F    E ++ QH   L+S    P L+ YM++    P V    N++
Sbjct: 11  LEQLQAR-YVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLL 69

Query: 268 K 270
           +
Sbjct: 70  E 70


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 93  TSRKERLQTSRFEIRMAIRXTSPAT-LQRFGIPAFLPWSSKVHE 221
           ++R E+L      ++   +   PA+   RFG PAF  W  K+ +
Sbjct: 70  STRVEKLVRILCRVKEITKTVPPASGRHRFGNPAFRIWHEKLRD 113


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 298 NPXDSQPGTIRGDLCIQVGRNI---IHGSDS-VESXKNEIGLW 414
           N  D++  T+  +L  Q G N+   IH +D  +ES KN+I  W
Sbjct: 436 NQYDARVRTLENELS-QAGVNLQEQIHQNDDLIESLKNQILTW 477


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 235 VPMVWEGLNVVKTGRQMLGATNP 303
           +  V EG N +  GRQ+L  T+P
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHP 410


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 108 FLFETFNNGAHKTTLYTIRLNHNKSTLTLFR 16
           + ++T NNG +KT   T    + K+   +F+
Sbjct: 174 YFYDTVNNGVYKTGFATTAEAYEKNVRVVFQ 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,850
Number of Sequences: 5004
Number of extensions: 28430
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)