Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_K18
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    27   1.7  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    27   3.0  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   7.0  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   9.3  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   9.3  

>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 339 LQENYRSLDLSSSIFPK--IFYDSQDLALHQSLMN 241
           L+EN   ++LSSSI P    + DSQ   L+Q+L N
Sbjct: 6   LKENTEIINLSSSIHPNRDSYLDSQSDPLNQNLYN 40


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 486 CHSRSHCHHYQPARLLVCVFSHHLHYCHSVCQIPDHH--WL 370
           CH+   CH Y+P R      + H H C +  +  DHH  WL
Sbjct: 184 CHT---CHLYRPPR------ASHCHLCDNCVEYLDHHCIWL 215


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 321 SLDLSSSIFPKIFYDSQDLALHQSLMNPAPALIG 220
           +L   S ++PK+F    D +L +S +  A AL G
Sbjct: 67  ALQTFSQVYPKLFIGENDRSLVESWVETASALAG 100


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 176 IQNTVCTWDLRTKDRFILLYSLNYILFDFIS 84
           I N VC  D+  ++R ++L S   I FD+ S
Sbjct: 273 IANDVCARDMSLEERAVMLGSAVTIDFDYFS 303


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 437 CVYFLIIFITVTLSVRFLIITGCFKVQQILVILFKKIIEV 318
           C+   +IF+   + V  + +  C KV  + +    K+I V
Sbjct: 150 CIKVTVIFLAQCVKVTVIFLAQCVKVTAVFLAKCVKVIAV 189


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 429 FSHHLHYCHSVCQIPDHHWLLQSSANSRHSLQENYRSLDLSSSIFPKIFYDSQD 268
           F+HH  +   +C I +    + S+  S  +   + +SL  ++S F  I  D+QD
Sbjct: 350 FTHHADWWDVLCDIDNQTIQVSSNLFSDATTTMDTKSLFNNTSPFTPISKDNQD 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,138
Number of Sequences: 5004
Number of extensions: 39848
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)