Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_K18
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800...    30   1.8  
01_06_1009 + 33796450-33796824,33796926-33796970,33797069-337971...    27   9.6  

>11_06_0234 +
           21574380-21575197,21576131-21576190,21578320-21580053,
           21581859-21582006
          Length = 919

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = -2

Query: 432 VFSHHLHYCHSVCQIPDHHWL---LQSSANSRHSLQENYRSLDLSS-SIFPKIFYDSQDL 265
           +F+  ++ CH + Q+  HH +   ++S  N    + E Y    + S    P IF D + L
Sbjct: 97  IFTWLINKCHKLSQLMIHHKIGNDIKSVENQVKEVTERYDRYRIDSIDAKPPIFIDPRIL 156

Query: 264 ALHQSLMN 241
            L++ + N
Sbjct: 157 GLYEKVTN 164


>01_06_1009 +
           33796450-33796824,33796926-33796970,33797069-33797182,
           33797679-33797759,33798038-33798211,33798353-33798438,
           33799157-33799901
          Length = 539

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 249 LMNPAPALIGI*FVQLLFSL*IKKYSEHCLH 157
           L+   P +IGI  V +LF   ++K SEH +H
Sbjct: 270 LLTAFPVIIGISVVLILFYNSLQKQSEHLVH 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,138
Number of Sequences: 37544
Number of extensions: 225894
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)