Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_K18
         (643 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL391121-3|CAI40861.1|  550|Homo sapiens tripartite motif-contai...    32   2.0  
BC021925-1|AAH21925.1|  551|Homo sapiens tripartite motif-contai...    31   2.6  
AF220034-1|AAG53488.1|  551|Homo sapiens tripartite motif protei...    31   2.6  

>AL391121-3|CAI40861.1|  550|Homo sapiens tripartite
           motif-containing 8 protein.
          Length = 550

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = -2

Query: 501 CPIYNCHSRSHCHHYQPARLLVCVFSHHLHYCHSVCQIPDHHWLLQSSANSRHSLQENYR 322
           CP +N +   HC   Q A    C +    H  HSVC +      ++     +  L+E  +
Sbjct: 145 CPQHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVCDVEIRRNEIRMLMKQQDRLEEREQ 204

Query: 321 SLD 313
            ++
Sbjct: 205 DIE 207


>BC021925-1|AAH21925.1|  551|Homo sapiens tripartite
           motif-containing 8 protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 501 CPIYNCHSRSHCHHYQPARLLVCVFSHHLHYCHSVCQI 388
           CP +N +   HC   Q A    C +    H  HSVC +
Sbjct: 145 CPQHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVCDV 182


>AF220034-1|AAG53488.1|  551|Homo sapiens tripartite motif protein
           TRIM8 protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 501 CPIYNCHSRSHCHHYQPARLLVCVFSHHLHYCHSVCQI 388
           CP +N +   HC   Q A    C +    H  HSVC +
Sbjct: 145 CPQHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVCDV 182


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,168,016
Number of Sequences: 237096
Number of extensions: 1334356
Number of successful extensions: 3005
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3004
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)