Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_K18
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U41031-4|AAA82621.3|  482|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    29   2.1  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    29   2.1  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    29   2.1  
X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.        29   3.7  
AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and gl...    29   3.7  
Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical
           protein T10H4.3 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 429 FSHHLHYCHSVCQIPDHHWLLQSSANSRHSLQENYRSLDLSSSIFPKIFYDSQ 271
           F+  + YC  V ++ D  W++ + A S  +L  N R+L+  S +F  +F  SQ
Sbjct: 266 FNGVVMYCTFVVEVWDKKWIIYAGAAS--NLIVNLRALNSLSHLFVCLFMSSQ 316


>U41031-4|AAA82621.3|  482|Caenorhabditis elegans Hypothetical
           protein C16B8.4 protein.
          Length = 482

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 242 ILHLH*LGFDLYSCFFHYKLKNIQNTVCTWDLRTKDRFILLYSLNYILFD 93
           + HLH       SC+F  ++KN  N+V T D+R    + +L  L+++ FD
Sbjct: 247 VAHLHFPRTAYDSCYFRLQVKNATNSVVT-DIRVDPTYSIL--LSHLEFD 293


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 489 NCHSRSHCHHYQPARLLVCVFSHHLHYCHSV 397
           N H +SH +HYQ  R + C ++    YCHS+
Sbjct: 589 NSHMKSHTNHYQ-FRCMDCTYA--TKYCHSL 616


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 489 NCHSRSHCHHYQPARLLVCVFSHHLHYCHSV 397
           N H +SH +HYQ  R + C ++    YCHS+
Sbjct: 611 NSHMKSHTNHYQ-FRCMDCTYA--TKYCHSL 638


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 489 NCHSRSHCHHYQPARLLVCVFSHHLHYCHSV 397
           N H +SH +HYQ  R + C ++    YCHS+
Sbjct: 611 NSHMKSHTNHYQ-FRCMDCTYA--TKYCHSL 638


>X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 431 YFLIIFITVTLSVRFLIITGCFK 363
           Y   ++ITV L V F II GCFK
Sbjct: 286 YSSAVYITVALFVIFSIIIGCFK 308


>AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein2 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 431 YFLIIFITVTLSVRFLIITGCFK 363
           Y   ++ITV L V F II GCFK
Sbjct: 286 YSSAVYITVALFVIFSIIIGCFK 308


>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 167 TVCTWDLRTKDRFILLYSLNYILFDFIS 84
           TV  W+LR +D F   YS + I+ D +S
Sbjct: 220 TVKQWELRVRDHFAKEYSSDLIIVDVMS 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,690
Number of Sequences: 27780
Number of extensions: 224211
Number of successful extensions: 728
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)