Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_K15
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   1.7  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    27   2.3  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   2.3  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   3.0  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.0  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   5.3  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   5.3  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 408  AVVDVEFGFDVIHQIQDVFDDRLLLCLDHFVH-LFDLNFGLGIDLGR 271
            A VDVE    V   I++ F+DR +L + H ++ + D N  L +D G+
Sbjct: 1389 AAVDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGK 1435


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 214 VKGSSKNLKPSTWVPGQGVAAKIDAETKVKIEEMNK 321
           V G+++  KPS  +PG     K + E + KI+E N+
Sbjct: 12  VFGTARIPKPSACLPGDFWKTKQEIEVQKKIDEFNQ 47


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 163 SRPRRRLKMKLKSTDRSVKGS-SKNLKPSTWVPGQGVAAKIDAETKVKIEEMNKMVQTQK 339
           +RP R         D S+  S SK+ K    V    +  + D+E + ++EE+ + ++  +
Sbjct: 71  NRPFRTNSSSFSPNDYSISESPSKSKKDGVHVSAVQLDNETDSEVESEVEELERELEAIE 130

Query: 340 EAVIKDV 360
           ++V  +V
Sbjct: 131 DSVYPEV 137


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 65  GESDPRNPTASSC*KTRCGESQRGKEAKSKTPKAGQGGGSR*S*KVQTG 211
           GES+  N T++S  K R     + K+AK +T K+G    +  S K+  G
Sbjct: 297 GESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLG 345


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 392 SSGLMSYTRFKTSLMTASFCVWTILFISSILTLVSASILA 273
           SSGL+     K     +S   + +L I S LTLV +S ++
Sbjct: 732 SSGLLELIALKIGNAVSSLNTFRVLLIFSALTLVVSSFIS 771


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 68   ESDPRNPTASSC*KTRCGESQRGKEAKSKTPKAGQGGG 181
            E+DP+NP A S      G +   +++K++ PK     G
Sbjct: 1284 ENDPKNPKAGS---QGSGNTSASEDSKTEKPKTRTNNG 1318


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 375 IHQIQDVFDDRLLLCLDHFVHLFDLNFGLGIDLGRNTLPWYPCAWL 238
           +H I+D  +   LL   HF+   +L++ +  DL    +   PC +L
Sbjct: 28  LHAIEDSNESLYLLAYSHFL---NLDYNIVYDLLDRVISHVPCTYL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,172
Number of Sequences: 5004
Number of extensions: 29968
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)